Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001703455 .1_202016-08-10] 1,133 sequences; 48,659,641 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq168 98.7 8e-16 >seq168 Length=541571 Score = 98.7 bits (108), Expect = 8e-16 Identities = 272/413 (66%), Gaps = 27/413 (7%) Strand=Plus/Plus Query 19348 GGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGT 19407 ||||| | ||||||||||| || || ||| |||||| | ||||| || |||| | Sbjct 226782 GGACTACTACTTTATGGGCCCCCAGGAACTGGTAAAACACTGATTGCCCGACAACTAGGC 226841 Query 19408 AAATTACTTACAAAAC----AACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAA 19463 ||| ||| | |||| | || || || ||||| ||||| || ||| | | ||||| Sbjct 226842 AAA--ACT--CTAAACGCCCATCCACCTAAGATTGTCAATGGCCCCGAAGTGCTGAATAA 226897 Query 19464 ATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGA--A 19521 | ||| |||||||| || || || | || |||| || || || || |||| | Sbjct 226898 GTTTGTTGGTCAATCCGAGGAGAACATCAGAAAGCTGTTCGCAGATGCAGAGAAAGAGTA 226957 Query 19522 CAA--AAACGTTTAGGGCG-CAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGAC 19578 ||| ||| |||| | | | ||| | | ||||| || || | ||||| | || Sbjct 226958 CAAGGAAA-----AGGGAGACGAGAGTGGTCTTCACATCATCATCTTTGATGAGCTTGAT 227012 Query 19579 GCAATCTGTAAGCAAAGAGGTTC---------TGGTGTAAATGGAGTACATGACACTGTT 19629 || | |||||||| ||||||| ||| | | || || ||| |||||| Sbjct 227013 GCTGTTTGTAAGCAGCGAGGTTCCGGATCTGGTGGCGGCACAGGTGTTGGTGATACTGTT 227072 Query 19630 GTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATT 19689 ||||| || ||||| | ||| | || ||||| || |||| || ||||| | | || Sbjct 227073 GTCAACCAGCTCCTTGCCAAACTCGATGGTGTGGACAAACTTAACAATATCCTTTTGATC 227132 Query 19690 GGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCG 19742 |||||||| ||| || ||| | || ||| || || |||||||||| || Sbjct 227133 GGCATGACCAATCGAAAGGATATGATCGACGAGGCTTTGCTACGACCCGGACG 227185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397450511753665