Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001703455
.1_202016-08-10] 1,133 sequences; 48,659,641 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq168 98.7 8e-16
>seq168
Length=541571
Score = 98.7 bits (108), Expect = 8e-16
Identities = 272/413 (66%), Gaps = 27/413 (7%)
Strand=Plus/Plus
Query 19348 GGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGT 19407
||||| | ||||||||||| || || ||| |||||| | ||||| || |||| |
Sbjct 226782 GGACTACTACTTTATGGGCCCCCAGGAACTGGTAAAACACTGATTGCCCGACAACTAGGC 226841
Query 19408 AAATTACTTACAAAAC----AACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAA 19463
||| ||| | |||| | || || || ||||| ||||| || ||| | | |||||
Sbjct 226842 AAA--ACT--CTAAACGCCCATCCACCTAAGATTGTCAATGGCCCCGAAGTGCTGAATAA 226897
Query 19464 ATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGA--A 19521
| ||| |||||||| || || || | || |||| || || || || |||| |
Sbjct 226898 GTTTGTTGGTCAATCCGAGGAGAACATCAGAAAGCTGTTCGCAGATGCAGAGAAAGAGTA 226957
Query 19522 CAA--AAACGTTTAGGGCG-CAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGAC 19578
||| ||| |||| | | | ||| | | ||||| || || | ||||| | ||
Sbjct 226958 CAAGGAAA-----AGGGAGACGAGAGTGGTCTTCACATCATCATCTTTGATGAGCTTGAT 227012
Query 19579 GCAATCTGTAAGCAAAGAGGTTC---------TGGTGTAAATGGAGTACATGACACTGTT 19629
|| | |||||||| ||||||| ||| | | || || ||| ||||||
Sbjct 227013 GCTGTTTGTAAGCAGCGAGGTTCCGGATCTGGTGGCGGCACAGGTGTTGGTGATACTGTT 227072
Query 19630 GTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATT 19689
||||| || ||||| | ||| | || ||||| || |||| || ||||| | | ||
Sbjct 227073 GTCAACCAGCTCCTTGCCAAACTCGATGGTGTGGACAAACTTAACAATATCCTTTTGATC 227132
Query 19690 GGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCG 19742
|||||||| ||| || ||| | || ||| || || |||||||||| ||
Sbjct 227133 GGCATGACCAATCGAAAGGATATGATCGACGAGGCTTTGCTACGACCCGGACG 227185
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397450511753665
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |