Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001703455
.1_202016-08-10] 1,133 sequences; 48,659,641 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq284 230 3e-55
seq204 132 6e-26
>seq284
Length=101724
Score = 230 bits (254), Expect = 3e-55
Identities = 1143/1784 (64%), Gaps = 57/1784 (3%)
Strand=Plus/Minus
Query 110331 TGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTC 110390
|||||||||| || || |||| || || || |||||||| || |||||||| |
Sbjct 52715 TGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTCTTGAGGC 52656
Query 110391 CTTGTTTCCATGCGTACATA-TGCATAGAAGAGAGCTTGGACATCGTTGGACTTTCCATG 110449
| | ||||| || | || | |||||| | || |||| |||||| || | ||||
Sbjct 52655 CAAGCTTCCA-GCCTGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTCCTTCATG 52597
Query 110450 AAGAGGTTCAT--ACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCCATATCAA 110507
|| ||||| ||| |||| | ||||||||| || || | || ||||| | ||
Sbjct 52596 TGGATGTTCAGTGACTGGGACT--GATCAATGAAGGCACCTCGATCAGCAGCCATCTGAA 52539
Query 110508 TGACATCCTTCATCTTA---ATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTG 110564
||| || || | || |||||||| || ||| ||| ||||| ||| | |
Sbjct 52538 CGAC---CTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCGGCAG 52482
Query 110565 GGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCT 110624
|||| | | || ||||| |||||||| | | | ||| | | ||||||| | |
Sbjct 52481 GGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCAT 52422
Query 110625 TGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACT 110684
|||||| ||||| || | ||||| |||| || |||||||| ||||
Sbjct 52421 CGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACT 52362
Query 110685 CACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTAT 110744
|||| ||||| | || |||||||||| | ||||| || || ||||| || || |
Sbjct 52361 CACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGT 52302
Query 110745 TACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAA 110804
| |||| || || | ||| ||| || ||||| || || | | ||||||||||| |
Sbjct 52301 TGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGA 52242
Query 110805 GACCCTTCTCCTTGATGCGTTCCTTGAGAACA---TCCCAGTCGTAGTTG--AGCTTGGT 110859
|| | ||||| ||||| ||| | |||||||| || | || ||
Sbjct 52241 TGCCGTGTGTCTTGAC---TTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAG-GGC 52186
Query 110860 TTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGT 110919
|| || |||| ||||||| ||||| || | || | || ||||| ||||| | |||||
Sbjct 52185 TTGACGTTCC-ACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGT 52127
Query 110920 TTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCGTGATACA 110978
|||| ||| | | | ||||| | ||| | || |||| ||||| || |
Sbjct 52126 AGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG-GCAGTGAGGGCAGCGTGGTAAA 52068
Query 110979 TGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGC 111038
|||| || ||||| | || | ||| || || ||| || || | ||| |
Sbjct 52067 TGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCCGGTGACTCGAAGGGCATGCG-C 52009
Query 111039 ACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATA 111097
| | || || |||| || || || |||||||| | |||||| |||| ||| |||||
Sbjct 52008 AGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATG 51949
Query 111098 TTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTT 111157
||| || || || || || || || || || |||| ||| || ||
Sbjct 51948 TTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTG 51889
Query 111158 TTGGTAACAATCTTTGTGATTTCATG-AAGTTTTTCATAATCAAAAGTGCGAGTCTCTTC 111216
||||| || ||| | || || || || | | || | || || ||| ||
Sbjct 51888 CGAACAACAACCTGACTGACCTTGTGCAACTTCTTGA-AGTCGTA---GCAAGCCTCATC 51833
Query 111217 AT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTT 111273
| ||| | || || || | || || | ||||| ||||| ||| ||
Sbjct 51832 GTAGTTGATGAAAGAGGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGG 51773
Query 111274 ATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTT 111333
| |||||| | |||||| || || | |||||| || || || || | |||||
Sbjct 51772 GGCACAGTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTT 51713
Query 111334 TTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGT 111393
|||||| ||||| |||||| |||||||||||||||||| | || | || ||||| ||
Sbjct 51712 TTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGT 51653
Query 111394 CTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGC-TGGTACAATGGCGTTGGCCCGT 111451
||| | | ||||| || | ||||| || | | | || || | || | ||| |
Sbjct 51652 CTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGC---GACCCTT 51596
Query 111452 -CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAG 111510
|||||| |||||||||| ||| || || || |||||||| || ||||| |||
Sbjct 51595 GCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAG 51536
Query 111511 ACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCAT 111570
|| || || || || || | || | ||| | ||| | ||||| ||||||||
Sbjct 51535 GCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCACCGTTCTTTTCAACACGCTTCAT 51476
Query 111571 GAAAAGGTCTGGAATCCACAGG--GATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTC 111627
|||||| || || ||||| ||| || |||| || || | ||| || |||| || |
Sbjct 51475 GAAAAGATCAGGGATCCAAAGGGCGAGGAAA--AGGTCACGGGCACGGA-CCTCCTCTTT 51419
Query 111628 ACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATA 111687
||| ||||| || | ||||||||||| | || ||| | |||||| ||||| || ||
Sbjct 51418 ACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTA 51359
Query 111688 GACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTT 111744
|| || | || || ||| ||| | || | |||||||| || ||| |||
Sbjct 51358 GATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTT 51299
Query 111745 AAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-ATACGA 111802
|| || |||||||| |||| || ||| | ||| ||| || || || ||| || ||
Sbjct 51298 GAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGA 51239
Query 111803 GATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATT 111862
| | | || | | | || | || || |||||||| |||||| ||| |||||
Sbjct 51238 G--CCAGTAGCACGGATACGGTGCACGTTCAGACCAATACCACCAGCCATCTTGGAGATC 51181
Query 111863 TGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATA 111922
||||| | | ||||| | ||||| || | || ||| ||||| | |||
Sbjct 51180 ATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCGACC 51121
Query 111923 AGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCG 111982
| ||||||| |||| || || || || || || |||||||| || || | ||
Sbjct 51120 AAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAAGCA 51061
Query 111983 TGAATGAACA--TACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTT 112040
|| |||| | | || ||||||| || ||||||||||||||| || || || |
Sbjct 51060 TGTGTGAAGAATTTGCT--GGACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCAT 51003
Query 112041 CCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGG 112084
| || || || | | || ||||||| ||||| ||| |||
Sbjct 51002 CACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGGG 50959
>seq204
Length=536571
Score = 132 bits (146), Expect = 6e-26
Identities = 530/819 (65%), Gaps = 29/819 (4%)
Strand=Plus/Plus
Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430
||||| | || |||||||| |||||||||||||| ||| ||||| ||||| |||||
Sbjct 425222 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 425281
Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCC-CAACTTGTTTGAGG 122484
||||| || || || | || || ||| | | || || | | || |||
Sbjct 425282 AAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTGCCAAGCGCGACA------AGG 425335
Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544
|||||||| | || |||||||||||| ||| ||||||||||| |||| |||
Sbjct 425336 AGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGG 425395
Query 122545 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 122604
||| || || || || || |||| | | |||||| || || || | | |||
Sbjct 425396 GCACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCGTCAGTAATGATA 425455
Query 122605 GCGTGGATAGTTTCGGTAGTGGGTCTA---TTACGCAAAGTCTTGAAGAGCTCCACGGCA 122661
| ||||| | | | ||| | | || | | | || ||| || ||||
Sbjct 425456 TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGGGAGTGGAGGAGG--CA-GGCA 425512
Query 122662 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGC 122721
|| || ||| ||||||||||| || || || || || || |||||| ||||| |||
Sbjct 425513 AAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGC 425572
Query 122722 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 122781
|||||||| |||||||| | ||| | |||| | ||| | || |||||||||||||
Sbjct 425573 ATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCC 425632
Query 122782 TCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAG-ACTTTGCATCAAACCA 122840
|| ||| || || |||| || || | ||| |||||| ||| ||| | | | |||
Sbjct 425633 TCAACAGCAGCGAAGGCAACGAGACGCTGGGCAAAGGAG-GAGTCCTTATCCTGGATCCA 425691
Query 122841 TTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAA 122900
| || ||||| | |||||||| || || || | || | ||||| | ||| |
Sbjct 425692 TCGGATGGCCCAGTCGGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTAAAGAG 425751
Query 122901 CT-GCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGC 122959
| | ||| | | ||||| ||||| ||||||| | || || || |||
Sbjct 425752 GTAGGTTC-GCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGG 425810
Query 122960 CATGAACCAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGA 123018
|| | | | ||| ||| | || | ||||||| | || || ||| |||||
Sbjct 425811 AGTGGATGTTCTCCATCATGATCTGGA-AGCCGTAGAAGCAACGAGCCTCGGGGATCTGG 425869
Query 123019 ACCTCATCCGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAA 123077
||||| || | ||| | | || ||||| ||||| ||||| || |||| ||
Sbjct 425870 ACCTC-GCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGAGGCAGCGAA 425928
Query 123078 GAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCAGTC 123134
||| || ||||||| | ||| || |||| || ||| || | ||||||||
Sbjct 425929 GAAAGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTC 425988
Query 123135 GTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173
|| ||||| ||||| | ||||| || || ||||||||
Sbjct 425989 GTGGAGATCCTTGGAAAGATCAATCTCCTCAGCAGTCCA 426027
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628023105496800
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