Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001703455
.1_202016-08-10] 1,133 sequences; 48,659,641 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq207 190 5e-43
seq168 172 1e-37
seq172 138 3e-27
seq284 113 1e-19
>seq207
Length=801058
Score = 190 bits (210), Expect = 5e-43
Identities = 177/222 (80%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGT 210952
||||||| || || ||||||||||| ||||| || |||||||| || || | ||| |||
Sbjct 247773 CGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAA-GGT 247831
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| |||||||||| |||||| || ||||||||||| || ||||| ||||| |||| ||
Sbjct 247832 GCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGGAATACC 247891
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||| ||||| |||||||| ||||| |||||| | || ||||| ||
Sbjct 247892 CTCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAG 247951
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| |||||||| ||||||||||| ||||| | ||||||
Sbjct 247952 GGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 247993
Score = 158 bits (174), Expect = 3e-33
Identities = 162/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| |||||||||||||||||||| || || ||||| ||||| | || || | || ||
Sbjct 248520 AGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCC 248579
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| ||||| || | |||||| ||||| || |||| || |||||||||
Sbjct 248580 TCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGAATGCCCTCCTTGTCC 248639
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || || || ||||| ||||| || ||||||||||| ||||| |||
Sbjct 248640 TGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 248699
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || | ||||| || || | ||||||
Sbjct 248700 TTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 248731
Score = 149 bits (164), Expect = 1e-30
Identities = 166/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || | ||| ||||| || || || || ||||| || || | ||| ||
Sbjct 248000 ACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGT 248059
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| |||||||| || |||||||| |||||||| || || ||||| || ||||||| ||
Sbjct 248060 TCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACC 248119
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||||| ||||| || || ||||| || || || || || ||
Sbjct 248120 CTCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAG 248179
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||| || |||||||| ||||| ||||| || || | |||||
Sbjct 248180 AGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 248221
Score = 149 bits (164), Expect = 1e-30
Identities = 153/200 (77%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| || ||||| || || || || || ||||| || || |||||||| | || |||
Sbjct 248238 AGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCT 248297
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || ||||| || || ||||| ||||| || ||||||||||| | || |||||||||
Sbjct 248298 TCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 248357
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| |||||| || || || |||||||| || || || ||||| |||||||| |||
Sbjct 248358 TGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTC 248417
Query 211083 TTTCCCGTGAGAGTCTTTAC 211102
|| || ||||| ||||| ||
Sbjct 248418 TTGCCAGTGAGGGTCTTGAC 248437
>seq168
Length=541571
Score = 172 bits (190), Expect = 1e-37
Identities = 167/215 (78%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || |||||||| || |||||||| || || ||||| | ||||||
Sbjct 348647 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCC 348706
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| ||||||||||| || ||||| || || || |||||||| || | || |||||||||
Sbjct 348707 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 348766
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || ||||||||||| || || ||||| || |||||||||
Sbjct 348767 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 348826
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| |||||||| ||||| || || | |||||| ||
Sbjct 348827 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 348861
>seq172
Length=381824
Score = 138 bits (152), Expect = 3e-27
Identities = 138/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| |||||||| || || | || || | ||||| || |||||||| || ||||||||
Sbjct 230232 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 230291
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
|| || |||||||| || |||| || ||||||||||||||||| || || || |||
Sbjct 230292 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 230351
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|||||||| ||| || |||||||| ||||| ||||| ||||| || ||||| || ||
Sbjct 230352 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 230410
>seq284
Length=101724
Score = 113 bits (124), Expect = 1e-19
Identities = 196/280 (70%), Gaps = 10/280 (4%)
Strand=Plus/Minus
Query 178093 GTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCC 178149
|||||||||||||||||| | |||| |||||| ||||| ||||| || ||||
Sbjct 51718 GTTCTTTTGGTTGCTCTTGCGGTTGCA---GGCATCCTTGTAGAGCATGAATGGGTTTCC 51662
Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209
||||| || ||| | |||||| | |||||| | ||| || || ||||||
Sbjct 51661 GGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCG 51602
Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269
| || || || ||||||||||||| ||| || ||||||| ||| ||| ||| ||
Sbjct 51601 ACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTC 51542
Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCG-TCTTCCTTC-ACT 178327
|||| || || ||| |||||||| | || |||| | |||| |||| ||| ||
Sbjct 51541 GGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCACCGTTCTT--TTCAACA 51484
Query 178328 CGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367
|| |||||||| || |||| | |||| | ||| |||||
Sbjct 51483 CGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAA 51444
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159135173097545
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |