Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001703455
.1_202016-08-10] 1,133 sequences; 48,659,641 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq207 107 1e-18
seq168 104 2e-17
>seq207
Length=801058
Score = 107 bits (118), Expect = 1e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||||||||| || || || ||||| ||||| || ||||| || || || || ||||
Sbjct 247993 ATGCAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGAGTCCAGT 247934
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|||||| | || | | || || ||| ||||| || ||| | || || ||||||
Sbjct 247933 GACACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAA 247874
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||| | || || || || || || ||||||| | ||||| || |||| ||||||
Sbjct 247873 CAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACAAC 247814
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || || ||||| ||
Sbjct 247813 ATCCAGAAGGAGTCAAC 247797
Score = 98.7 bits (108), Expect = 7e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||| | || || || || ||||| ||||| ||||| || |
Sbjct 248731 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 248672
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| | || ||| | || | || | || ||||| || || | || || || ||
Sbjct 248671 GACACTATCGACAATGTCAAGTCCAAGA-TTCAGGACAAGGAGGGCATTCCCCCCGACCA 248613
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| || || || || |||||||| || || || |||| |||||| | ||||||||
Sbjct 248612 GCAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAA 248553
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||||||
Sbjct 248552 CATTCAGAAGGAGTCCAC 248535
Score = 95.1 bits (104), Expect = 8e-15
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || |||||||| ||||| || || ||||| ||||| || || |
Sbjct 248221 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 248162
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||| ||| | || | || | | ||||| || ||| | || || |||||
Sbjct 248161 GATACCATTGATAATGTGAAGAGCAAGA-TCCAGGACAAGGAGGGTATTCCTCCCGATCA 248103
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || || || ||||| ||||| ||||| | || ||| | ||| |||||
Sbjct 248102 ACAGCGACTCATCTTCGCTGGCAAGCAACTTGAAGATGGCCGAACTCTTTCCGACTACAA 248043
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
||| || || || || || | || || |||
Sbjct 248042 CATTCAGAAGGAATCTACTCTCCACTTGGTT 248012
>seq168
Length=541571
Score = 104 bits (114), Expect = 2e-17
Identities = 145/201 (72%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||||||||| || ||||||||||| || |||||||| || || || || ||
Sbjct 348861 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 348802
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| ||||| | || ||| | || | || || ||||| || || | || || ||
Sbjct 348801 TCCGACACCATCGACAATGTCAAGTC-CAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 348743
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
|| ||||| | || ||||| ||||| || || || || | |||||| | |||| ||
Sbjct 348742 CCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGCGACTA 348683
Query 23787 CAACATACAAAAAGAGTCCAC 23807
|||||| || || ||||||||
Sbjct 348682 CAACATCCAGAAGGAGTCCAC 348662
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338004932615564
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |