Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20cucumerinum_20[genbank_20GCA_5F001703455 .1_202016-08-10] 1,133 sequences; 48,659,641 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq207 172 1e-37 seq168 165 2e-35 seq172 147 5e-30 seq204 122 2e-22 seq425 91.5 3e-13 >seq207 Length=801058 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | ||| || || || |||||||| |||| Sbjct 248504 ACCACCACGGAGGCGGAGAACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGA 248563 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || ||||| || ||||| ||||| ||||| || Sbjct 248564 GAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGG 248623 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| || ||||| | || || | ||||||||||| |||| || || Sbjct 248624 AATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAAC 248683 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 248684 CTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 248731 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || ||||| | || ||| || || ||||||||||| || Sbjct 248222 ACCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGC 248281 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||| || || ||||| || || |||||||||| || || |||||| || Sbjct 248282 AAGGGTTCGGCCGTCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGG 248341 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||||| || || | ||||| || || || | ||||| Sbjct 248342 GATGCCCTCCTTGTCCTGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGAC 248401 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATAT 283093 || |||||||| ||||| || || | ||||| |||| ||| Sbjct 248402 CTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGACTAT 248443 Score = 145 bits (160), Expect = 2e-29 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | || ||| || || ||||||||||| | Sbjct 247994 ACCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGA 248053 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || |||||||| || ||||| || || || ||||| | || ||||| || || Sbjct 248054 AAGAGTTCGGCCATCTTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGG 248113 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||||||||||||||| |||||| ||||| || || |||| || || || || | |||| Sbjct 248114 AATACCCTCCTTGTCCTGGATC-TTGCTCTTCACATTATCAATGGTATCGGATGACTCGA 248172 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| ||||| || ||||| || || | ||||| ||||| || ||||| Sbjct 248173 CTTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 248221 Score = 129 bits (142), Expect = 1e-24 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTC-AGC 282931 ||||| || || || || || || || | || || || |||||||||||||| | Sbjct 247767 CCACCGCGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTC 247826 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| ||||| || | || || || || ||||| | ||| ||||| ||| || Sbjct 247827 AAG-GTGCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGTTGATCAGGGGG 247885 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 ||||||||||||||| || ||| ||||| || ||| | ||||||||||| | |||| Sbjct 247886 AATACCCTCCTTGTCCTGAATC-TTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGA 247944 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || || ||||| ||||| || || | |||||| || || |||||||| Sbjct 247945 CCTCAAGGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 247993 >seq168 Length=541571 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || ||||| || | ||| || || |||||||||||||| Sbjct 348631 ACCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 348690 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| |||||||| || || || || |||||||| | || || |||||| || Sbjct 348691 CAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGG 348750 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || || | ||||| ||||| |||| || || Sbjct 348751 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCAC 348810 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || ||||||||||| ||||| | ||||| ||||| |||||||| || Sbjct 348811 CTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 348861 >seq172 Length=381824 Score = 147 bits (162), Expect = 5e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || |||||||||||||| | || || ||||||||||| || || || || || |||||| Sbjct 230232 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 230291 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | || |||||||| ||||| ||||||||||| |||||||| | || || | ||| Sbjct 230292 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 230351 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || |||||||| | ||||| ||||| ||||| ||||| ||||||| ||||| ||||| Sbjct 230352 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 230410 >seq204 Length=536571 Score = 122 bits (134), Expect = 2e-22 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 230191 AGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGG 230250 |||||||| | || ||| |||| || ||| |||||||||| |||| |||||| Sbjct 425426 AGGAGTTCCTCACTGAGGCTCTTCCCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGA 425367 Query 230251 GGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGT 230310 ||| || || || ||||| ||||||||| | | || ||||| || ||||||| || | Sbjct 425366 AGCAGTACATTGAGTTCGTCGCTGATCGTCTCCTTGTCGCGCTTGGCAACGAGAAGGTTT 425307 Query 230311 ATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACT 230370 | || ||| |||||||||| || |||||| ||| || || || || || |||| Sbjct 425306 ACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACT 425247 Query 230371 TCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410 ||||||| |||||||| ||| || || | | ||||||| Sbjct 425246 TCTTCGAGAAGCGTGTTGCCGACTACCAGAAGGCCGGTGT 425207 >seq425 Length=496442 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 315640 AATTCGCCACTGTGACTAATCACCACCACCCCACCTCCGAAATTCTTAAGCGCCTCTGCC 315699 || ||| || |||| |||| | | || ||||| |||| ||||| || |||| | | Sbjct 180798 AACTCGGCAGAGTGAGTAATGATGATGACACCACCCTCGAACTTCTTCAGGGCCTTGGAC 180739 Query 315700 ATGGCACCGAGACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGG 315759 | |||||||||| || || || | | ||||||| ||||| ||||| ||||| | || Sbjct 180738 AGGGCACCGAGAGAGTCACGATCGAGATAGTTGGTAGGCTCGTCAAGGACGATAAGATGA 180679 Query 315760 GGTTGTTGCCATAGAGCG-GCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCC 315818 ||| | ||||| ||||| ||| | | || ||| | || ||||||||||| || Sbjct 180678 GGTCGCTGCCA-AGAGCAAGCGGCAAGGACAGTCTTGACACGCTGACCACCAGACAGACC 180620 Query 315819 ACGGATGCGAGAATGAG 315835 ||| |||||||| |||| Sbjct 180619 ACGCATGCGAGAGTGAG 180603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046724004944982