Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233895.1_ 202017-07-27] 2,454 sequences; 53,227,347 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2256 251 7e-62 seq601 143 3e-29 seq534 123 3e-23 seq545 116 4e-21 >seq2256 Length=1610869 Score = 251 bits (278), Expect = 7e-62 Identities = 543/804 (68%), Gaps = 15/804 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||| | |||||| | || || Sbjct 1497866 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTT 1497807 Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | |||||| | ||| ||| | | | |||| ||| || Sbjct 1497806 TCCAAGGATCTCCAT-GACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTCGTCTC 1497748 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | || || || ||||| || || || || ||||||||||| || |||||||| Sbjct 1497747 TCACATCCTTGCTTTCTTCGCTGCGTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCG 1497688 Query 116812 TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| | ||||| ||| | ||||||| || |||||||||||||| |||||| || Sbjct 1497687 ATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGAT 1497628 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTCTT 116927 ||||||| | ||||| || | || || ||||| ||||| ||| | | || | Sbjct 1497627 GGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCCGC 1497568 Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 | | ||| || | | | | |||||||| ||||| || || ||| || | |||||| Sbjct 1497567 CCA--GCGAACCTACCTCTTT--AACGCCATTGAGACCATCCCCTGCATCCGAAAGAAGG 1497512 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 |||| ||||| | || |||||| | | || || |||| | | |||| || || | Sbjct 1497511 CCGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTG 1497452 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 | ||||| || || ||||| ||||||| || |||||| | || || ||||||| Sbjct 1497451 CTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCA 1497392 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| || || ||||||||||| ||||| ||| ||||||||||||||| | || |||| Sbjct 1497391 AGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGG 1497332 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGG 117227 |||| || ||||||||||| | || | || | | || | ||| | Sbjct 1497331 GTCTTCACACTGACTTTGCCTGCCTCCTCCACTCTCACCTCAAGGGTCGTGCCAGCAAGC 1497272 Query 117228 CGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAG 117287 | || ||| ||| | || || || ||| |||| |||||| |||||||| || | Sbjct 1497271 AGATGATCCAGGATATCATTACTGATGCCGTCACCATTGAGCAGGAGTTCCTCACTGAGG 1497212 Query 117288 CGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTC 117346 | || || |||| || || || | || | || ||| ||| ||||| |||||| Sbjct 1497211 CTCTTCC-CTGCGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTC 1497153 Query 117347 GTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCG 117406 ||||| || | || || ||| ||| | | || ||| ||||| | ||||||| Sbjct 1497152 GTCGCTGATCGTCTCCTTGTCGCGCTTGGCAACGAGAAGGTTTACAAGGCCACCAACCCC 1497093 Query 117407 CTGGACTTTATGAACCTCATCTCC 117430 | ||||| ||| | ||||||| Sbjct 1497092 TTCGACTTCATGGAGAACATCTCC 1497069 >seq601 Length=675774 Score = 143 bits (158), Expect = 3e-29 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || |||||||| || || |||||| | || || || | Sbjct 347940 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 347881 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | |||| ||||| || || | ||||| |||||||||||| | || Sbjct 347880 TCCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGA 347822 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| ||||| |||| || ||||| ||||| || || | |||||||| | ||||| Sbjct 347821 CCAGCAGCGACTTATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGTGACTA 347762 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||||| |||| || || || || Sbjct 347761 CAACATCCAGAAGGAGTCCACCCTCCACCTGGT 347729 >seq534 Length=1254335 Score = 123 bits (136), Expect = 3e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| ||||||||| |||| ||||| || | |||| | | Sbjct 1114686 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 1114745 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| |||||||| ||| ||||||| || ||||| Sbjct 1114746 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 1114805 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || || ||||| || || | || || ||| ||||||||||||||||||| Sbjct 1114806 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 1114865 Query 40879 G 40879 | Sbjct 1114866 G 1114866 >seq545 Length=357985 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| ||||||||| |||| || || | || Sbjct 100955 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 100896 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || |||| ||||| |||||||| ||| | |||||| Sbjct 100895 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAG 100836 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | ||| ||||| ||||| || |||| ||||| ||| || |||||| Sbjct 100835 CAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAAC 100776 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||||||| | || || || || || Sbjct 100775 ATTCAGAAGGAGTCTACTCTTCACCTTGT 100747 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||| || || ||||||||| | || ||||| ||| Sbjct 100217 ATGCAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGAGTCCAGT 100158 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || |||| ||||| ||||| || ||| | || || Sbjct 100157 GACACTATCGACAACG-TGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCA 100099 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || || ||| |||| || | |||||| | | ||||||||| Sbjct 100098 GCAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACAA 100039 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || || || || Sbjct 100038 CATCCAGAAGGAGTCAACTCTTCACCTCGT 100009 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755 ||| |||| || || ||||| ||||| |||||||| | || ||||| | |||| | | Sbjct 100667 ATAGTCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGATACC 100608 Query 40756 GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGA 40815 | | | | ||| ||| |||| || || ||||| ||||| | |||||||| || Sbjct 100607 ATCGACAATGTTAAGTCAAAGATTCAGGATAAGGAGGGTATCCCTCCTGACCAGCAGCGC 100548 Query 40816 CTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAG 40875 || |||| || || || || || || |||| || ||||| |||||||||||| ||| Sbjct 100547 CTGATCTTTGCTGGAAAGCAACTCGAAGACGGCCGAACCCTTGCCGACTACAACATTCAG 100488 Query 40876 AAGGAGGCCACGCTGCATCTAGT 40898 ||||| | || || ||||| || Sbjct 100487 AAGGAATCTACCCTTCATCTCGT 100465 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || ||||| || | || ||||| | || Sbjct 100445 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 100386 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | ||| || || | ||||| ||||| || || | || || Sbjct 100385 GATACCATTGATAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAA 100326 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||| |||| ||| ||||| || || || || | || || || |||||||||| Sbjct 100325 CAGCGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACAAC 100266 Query 40870 ATCCAGAAGGA 40880 || |||||||| Sbjct 100265 ATTCAGAAGGA 100255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515203395651040