Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233895.1_ 202017-07-27] 2,454 sequences; 53,227,347 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq225 159 4e-34 >seq225 Length=1102471 Score = 159 bits (176), Expect = 4e-34 Identities = 580/899 (65%), Gaps = 18/899 (2%) Strand=Plus/Minus Query 63023 GATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAA 63082 ||| || || | || | ||| || ||||| ||| || |||||||| || || ||||| Sbjct 390902 GATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAA 390843 Query 63083 TGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTA 63141 ||| | || || ||| |||| | || | ||| || | ||| | | || ||||||| | Sbjct 390842 TGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA-GTTTCTGAGCCTTGA 390784 Query 63142 TTATAGATTTGTATCTCCTTTCTCTT----TCGTA--TAGAGTATACAATCGTTCGAACT 63195 | || ||| | |||| | || ||||| | ||| | | | ||||||| Sbjct 390783 T---AGTCTTGCGAC-CCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCC--TCGAACT 390730 Query 63196 CGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTC 63255 | ||||| || | | | | | ||| || || | || ||||||| || ||| || | Sbjct 390729 CCTCTCCGTAACAGTCGGCGAGGCCAGGGCACTCGTTAGGGCACATCAGCGTCCAGTCGC 390670 Query 63256 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 63315 ||| | | || || ||||| || |||||||| |||||||| || | || || || | Sbjct 390669 CGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCAC 390610 Query 63316 TTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 63375 | | ||||| || || ||||| ||||| |||||| | | | ||||| Sbjct 390609 GGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAG 390550 Query 63376 AATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTA 63435 | ||||| || || | ||| ||||| | | | || || || ||||| || ||||| || | Sbjct 390549 AGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGA 390490 Query 63436 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCAT 63495 || | ||| ||||| || | || | | ||| |||| || |||||| ||| |||| | Sbjct 390489 CATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGT 390430 Query 63496 TGGTACCGGAGATATAGCCTCCACTGGCACGAATAT--TACTAATTGATAGACCTATTCC 63553 ||||||||| || ||| ||| | ||||| ||| | | || | | || || || Sbjct 390429 TGGTACCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCA--GGCCAATACC 390372 Query 63554 CCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCT 63613 || ||||| || ||||| | || || || | || || ||||| || || || || Sbjct 390371 ACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACT 390312 Query 63614 ATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATT 63673 || || |||| | || | || || |||| |||| | ||| || || || || Sbjct 390311 GTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTT 390252 Query 63674 AAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT 63733 || | || ||||| || || || || |||| || | || ||||| ||||| | Sbjct 390251 GAAGAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGGACATCAGGTTGTATGTCTCCAA 390192 Query 63734 AGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGG 63793 || || ||||| ||| || || | |||||||| | |||||||||||| Sbjct 390191 GACTCGCTCGATATCATCACCCCAAATACCAACAGACACACGCATGATCATGTGCTGAGG 390132 Query 63794 TCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACC 63853 | || ||||| || || || || | | ||| ||| |||||||| || || || Sbjct 390131 GCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCC 390072 Query 63854 AAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTAT 63912 ||| || | |||| || || || || || | ||| | || | | || ||||||| Sbjct 390071 AAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGTCCAACTCCTCCTTAT 390013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629798280345120