Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233895.1_
202017-07-27] 2,454 sequences; 53,227,347 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq225 183 4e-41
seq2256 98.7 1e-15
>seq225
Length=1102471
Score = 183 bits (202), Expect = 4e-41
Identities = 590/906 (65%), Gaps = 20/906 (2%)
Strand=Plus/Minus
Query 71749 ATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 71808
|||||||||||||| || || | |||||| || | || | ||| || |||||
Sbjct 390931 ATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTG 390872
Query 71809 TTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATA 71868
||| || |||||||| || || || || || | || || ||| |||| | || | |
Sbjct 390871 CGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGA 390812
Query 71869 ATCGCTTTCCAGACGACTC-GAGCCTTTATTATATTCTTGTATCTCTT---TTCTCTTTC 71924
|| || | ||| | | || |||||| | ||| ||||| | ||| || | ||
Sbjct 390811 ATGGCGTACCA-AAGTTTCTGAGCCT---TGATAGTCTTGCGACCCTTGCCCTCCTTCTC 390756
Query 71925 GTA--TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACAT 71982
||| || ||| | | | |||||||| ||||| || | | | | ||||| ||
Sbjct 390755 GTACTTTTCGTACAGAGCC--TCGAACTCCTCTCCGTAACAGTCGGCGAGGCCAGGGCAC 390698
Query 71983 TCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGAT 72040
|| || || ||||||| | ||| || || | || ||| || || ||||| || ||||
Sbjct 390697 TCGTTAGGGCACATCAGCGTCCAGTCGCCGT--TCTTTTCAACACGCTTCATGAAAAGAT 390640
Query 72041 CAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCT 72100
|||| |||||||| || | || || || | || | |||||| || || ||||
Sbjct 390639 CAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCT 390580
Query 72101 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 72160
| ||||| |||||| | | | |||||| ||||| || || | ||| ||||| | |
Sbjct 390579 TACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAG 390520
Query 72161 CTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 72220
| || || || ||||| || ||||| || | || | ||| ||||| || | || | |
Sbjct 390519 CACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAA 390460
Query 72221 ACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 72280
||| |||| || ||| || |||| ||| ||||| |||| || ||| ||| | ||||
Sbjct 390459 GCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCAATGTAGGAGCCAGTAGCAC 390400
Query 72281 GAATA--TTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 72338
| ||| ||| || || || || || || ||||| || ||||| | || ||
Sbjct 390399 GGATACGGTGCACGTT--CAGGCCAATACCACCAGCCATCTTGGAGATCATGGCACAGGT 390342
Query 72339 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398
|| | ||||| ||||| ||||| ||||| || ||| |||| | || | || ||
Sbjct 390341 CTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGA 390282
Query 72399 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 72458
|||| |||| | || || || || || || | || ||||| || || || || |
Sbjct 390281 TGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAGAA 390222
Query 72459 TTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCC 72518
||| |||| || ||||| ||||| | || || ||||| || ||
Sbjct 390221 TTTGCTGGACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAATACC 390162
Query 72519 TACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAA 72578
|| | |||||||| | ||| |||||||| | || || ||||| | || || |
Sbjct 390161 AACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAG 390102
Query 72579 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 72638
| ||| ||| |||||||| || || ||||| || | |||| || || || || ||
Sbjct 390101 GAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATA 390042
Query 72639 AATAAT 72644
| |||
Sbjct 390041 GACAAT 390036
>seq2256
Length=1610869
Score = 98.7 bits (108), Expect = 1e-15
Identities = 356/552 (64%), Gaps = 10/552 (2%)
Strand=Plus/Plus
Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138
||| ||||||||||| | | || | |||||||| || || || |||||||| || ||
Sbjct 1497324 GTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACC 1497383
Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198
|||||| || ||||| || ||||| || || | ||| |||||||| || || || ||
Sbjct 1497384 ACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGC 1497443
Query 42199 CGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGTATCCA-CTTTTGAG 42254
|| || |||| || | || || | || | | || || ||||| | || |
Sbjct 1497444 AGCGAAAGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATG-G 1497502
Query 42255 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 42314
|||| |||||||||||| | || || || || || ||||| |||||||| ||| ||
Sbjct 1497503 CCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAAGAGGTAGGTTC 1497562
Query 42315 tttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGT 42374
| || || | || || || || | || || | || || || ||||
Sbjct 1497563 GCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGATGT 1497622
Query 42375 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTAC 42434
| || || ||||| || |||||||| || | ||||||| | ||| || || ||
Sbjct 1497623 TCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTCGCCAC 1497682
Query 42435 AAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 42494
||||| || | | || ||||| || || || ||| || || || || || | |
Sbjct 1497683 TGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGACGCAGCGAAGAAAGCAAGGA 1497742
Query 42495 CATGTTTTATAAAATATTTTTCGTCCGGTGTTA---ATTTATTCCAATCATTGATATCTT 42551
|| | || | | || || | || | || ||||| |||| || ||| |
Sbjct 1497743 TGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTCATGGAGATCCT 1497802
Query 42552 TAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCC 42611
| || | ||| | || || | ||||| || || || || ||||| || ||||| | ||
Sbjct 1497803 TGGAAAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 1497862
Query 42612 AGA--TATCATG 42621
| | |||||||
Sbjct 1497863 AAATCTATCATG 1497874
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671118612805040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |