Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233895.1_ 202017-07-27] 2,454 sequences; 53,227,347 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2256 246 4e-60 seq225 136 6e-27 >seq2256 Length=1610869 Score = 246 bits (272), Expect = 4e-60 Identities = 567/843 (67%), Gaps = 21/843 (2%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 |||||| |||||||||| |||||| |||| ||||| ||||| | || ||| | ||||| Sbjct 1497866 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTT 1497807 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || | || ||| | | || |||||| ||||| || | || Sbjct 1497806 TCCAAGGATCTCCATGACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTCGTCTCT 1497747 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||||| | || ||||| || | || ||||| || |||||||| || || || || || Sbjct 1497746 CACATCCTTGCTTTCTTCGCTGCGTCTGATGGTATTGTCAACGAGAACCTCGTCGAG-CG 1497688 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT-GCTTTTACGGATTCCAAATCATGA 125256 |||| | ||| | || || |||| |||| |||| ||||| ||||| ||||||| Sbjct 1497687 ATTCAGTGGCGAGGTCCAGATCCCCGAGGC-TCGTTGCTTCTACGGCTTCCAGATCATGA 1497629 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC-G 125315 | |||||| | ||||| || | ||||| || ||||||| ||||| || || | Sbjct 1497628 TGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCCG 1497569 Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 | | ||| | ||||||||||| || || || | || | || || || ||||| Sbjct 1497568 CCCAGCGAACCTAC-CTCTTTAACGCCATTGAGACCATCCCCTGCATCCGAAAGAAGGCC 1497510 Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435 | |||| || || |||||| | || | | || || | ||| | | || || || Sbjct 1497509 GACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCT 1497450 Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495 ||||| || || ||||| |||||||| ||| || || | ||||| ||||||||| Sbjct 1497449 TTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAG 1497390 Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555 ||||| || ||||||||||| ||||| | |||||| | || ||||| || ||||| Sbjct 1497389 AAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGT 1497330 Query 125556 CTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCC 125615 || ||| |||||||||| || || | ||| | | | | || | | || Sbjct 1497329 CTTCACACTGACTTTGCCTGCCTCCT------CCACTCT---CACCTCAAGGGTCGTGCC 1497279 Query 125616 AGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTA 125675 ||| | | | | || | || | || |||||||| | || || || ||||| || Sbjct 1497278 AGCAAGCAGATGATCCAGGATATCATTACTGATGCCGTCACCATTGAGCAGGAGTTCCTC 1497219 Query 125676 ACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATA 125735 || || | || || | | | | |||||||||| | || ||| ||||||| Sbjct 1497218 ACTGAGGCTCTTCCCTGCGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATT 1497159 Query 125736 GAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTTACAACGCC 125792 ||||| || || |||||||| || || | ||||| || ||| ||||||| ||| Sbjct 1497158 GAGTTCGTCGCTGATCGTCTCCTTGTCG---CGCTTGGCAACGAGAAGGTTTACAAGGCC 1497102 Query 125793 AAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAG 125852 | || ||||| || |||||| | ||| || || | || ||||||||||| |||||| Sbjct 1497101 ACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAG 1497042 Query 125853 AAG 125855 ||| Sbjct 1497041 AAG 1497039 >seq225 Length=1102471 Score = 136 bits (150), Expect = 6e-27 Identities = 301/446 (67%), Gaps = 4/446 (1%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || ||| | ||| ||||| | || ||||||||| | || Sbjct 390495 CAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCACTCTGAT 390554 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || | || | || || ||| || || |||| || ||| | ||| Sbjct 390555 GTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCCGTGCCCGTGAC 390614 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || || ||| | || ||| | ||||||||||| || | | ||| || Sbjct 390615 CTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAACGGCGAC 390674 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || |||||||| || || || || || |||| || | || || ||||| Sbjct 390675 TGGACGCTGATGTGCCCTAACGAGTGCCCTGGCCTCGCCGACTGTTACGGAGAGGAGTTC 390734 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC-GATACGTGAGACGAGTCGATGCACG 97174 ||||| |||| |||||| | |||||| | || |||| | || | || | Sbjct 390735 GAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGCAAGACTA-TCAAGGCTCA 390793 Query 97175 AGAACTGTGGAAGGCCAT-CGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| ||| | ||||| | ||| ||| ||| ||||| |||| || | ||| |||| Sbjct 390794 GAAACTTTGGTACGCCATTCTTGA-GGCCCAGACTGAGACCGGAAACCCATTCATGCTCT 390852 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 |||||||| || || ||||| ||||||||| || | || |||||| |||||| Sbjct 390853 ACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCATCCGAAGCTCCA 390912 Query 97294 ATCTGTGCACGGAAATTGTAGAGTAC 97319 | |||||||| |||||| | |||||| Sbjct 390913 ACCTGTGCACTGAAATTATTGAGTAC 390938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741036468009040