Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233895.1_
202017-07-27] 2,454 sequences; 53,227,347 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq545 104 2e-17
seq601 87.8 1e-12
>seq545
Length=357985
Score = 104 bits (114), Expect = 2e-17
Identities = 147/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
|| || || |||||||| || |||||||||||| || ||| | || ||||| ||
Sbjct 100015 TGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCTTCCAACTGC 100074
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAAT-TTG 16851
|| || || | ||||| ||||| || || || | ||||| ||||| ||| |||
Sbjct 100075 TTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTG 100134
Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911
|| |||||| | | | | |||||| | || ||| || | ||||||||| ||||||||
Sbjct 100135 CT-CTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTCTTTCCGGT 100193
Query 16912 CAGCGTTTTGACAAAAATCTGCAT 16935
|| || || ||||||||||||||
Sbjct 100194 GAGAGTCTTCACAAAAATCTGCAT 100217
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || || || ||||| || ||||||||||||| | ||| | | |||
Sbjct 100234 AGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCC 100293
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGT-C 16842
|| | ||| ||||| || | ||||| |||||||| || ||| | ||||| |||| |
Sbjct 100294 TCAAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCC 100353
Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902
| | ||||| |||||| | | | || ||| | ||| ||||| || |||||
Sbjct 100354 TGGATCTTGCT-CTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGT 100412
Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
||||| || || || ||||| || || |||||
Sbjct 100413 CTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 100445
>seq601
Length=675774
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || ||||||||||| || ||||||||||| || ||| | |||
Sbjct 347726 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCACTCAGGGTGCGTCCATCC 347785
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|| | || ||||| ||| | ||||| ||||| ||||| || | |||||| |||||
Sbjct 347786 TCGAGCTGCTTGCCAGCAAAGATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 347845
Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903
|| | ||| || | | | | |||||| | |||| || | |||||| ||
Sbjct 347846 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 347905
Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|| || || || || ||||| ||||||||||| |||
Sbjct 347906 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 347941
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405075884577460
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |