Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233895.1_ 202017-07-27] 2,454 sequences; 53,227,347 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq545 123 2e-23 seq601 111 1e-19 seq534 86.0 5e-12 >seq545 Length=357985 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || | ||||| ||||| || | || Sbjct 100445 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 100386 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || || || || ||||||||||||||||| ||||||||| Sbjct 100385 GATACCATTGATAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAA 100326 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || ||||| || || ||||| || | |||||| ||| || | ||||| |||||| Sbjct 100325 CAGCGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACAAC 100266 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || ||||| || | || || ||| | || | || || ||| Sbjct 100265 ATTCAGAAGGAATCTACTCTCCACTTGGTTCTCCGTCTTCGTGGTGGT 100218 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || ||| | ||||| || || |||| ||||| || || ||| Sbjct 100217 ATGCAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGAGTCCAGT 100158 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || ||||| ||||||||||||||||| || ||||| Sbjct 100157 GACACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAG 100098 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| || || || || ||||| || ||| |||||| | ||| |||||| Sbjct 100097 CAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACAAC 100038 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | || | ||| | ||| | ||||| || Sbjct 100037 ATCCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACTTCGCGGTGG 99991 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || ||||| || || |||| || || || || | || Sbjct 100955 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 100896 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || ||||| ||||||||||| ||||| || || || Sbjct 100895 GACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCTGACCAG 100836 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || || |||||||| ||| | ||||| |||||| |||| ||||||||| Sbjct 100835 CAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAAC 100776 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 100775 ATTCAGAAGGAGTCTAC 100759 Score = 95.1 bits (104), Expect = 1e-14 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||||||||| || || | |||||||| | ||| || | || | Sbjct 100649 ACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGATACCATCGACAATGTTAAGTCA 100590 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| || ||||||||||| || || || || || || || || ||||| || || Sbjct 100589 AAGATTCAGGATAAGGAGGGTATCCCTCCTGACCAGCAGCGCCTGATCTTTGCTGGAAAG 100530 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | || || ||| ||| | |||| ||||||||||| || ||||| ||| | ||| Sbjct 100529 CAACTCGAAGACGGCCGAACCCTTGCCGACTACAACATTCAGAAGGAATCTACCCTTCAT 100470 >seq601 Length=675774 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || || || | || || || ||| |||| ||||| ||||| | Sbjct 347940 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 347881 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | ||| | |||| || || || ||||||||||| || || || || Sbjct 347880 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGAC 347821 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || ||||| ||||| ||||| ||| | |||||| |||||| | || ||| Sbjct 347820 CAGCAGCGACTTATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGTGACTAC 347761 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || || || |||||| Sbjct 347760 AACATCCAGAAGGAGTCCACC 347740 >seq534 Length=1254335 Score = 86.0 bits (94), Expect = 5e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || | || || || || |||| || || || || || | || ||| | Sbjct 1114685 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 1114744 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| || |||| || || || ||||||||||| ||||| || || ||||| || || Sbjct 1114745 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACT 1114804 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || || || || ||| | |||||| ||| || ||||||| |||||||| || || Sbjct 1114805 GATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAA 1114864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419715446722510