Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233895.1_ 202017-07-27] 2,454 sequences; 53,227,347 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq601 161 2e-34 seq545 159 6e-34 seq534 147 4e-30 seq2256 118 2e-21 seq2167 107 4e-18 seq1745 86.0 1e-11 >seq601 Length=675774 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||| ||| || |||||||| || |||||||| || || Sbjct 347711 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCACTC 347770 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || |||| || ||||| || || Sbjct 347771 AGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGTCGCTGCTGGTCAGGGGGG 347830 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 347831 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 347890 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||||||||||||||| |||||||| Sbjct 347891 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 347937 >seq545 Length=357985 Score = 159 bits (176), Expect = 6e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || || ||||| || || ||||| ||||| ||| Sbjct 100729 CCACCACGGAGGCGGAGAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGAG 100788 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || | | ||| ||||| || ||| Sbjct 100789 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCAGGGGGA 100848 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | |||||| ||||| ||||| | || || || Sbjct 100849 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACC 100908 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | ||||||||| || || || | |||||||||||| |||||||| ||| Sbjct 100909 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATGATG 100959 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||||| || || || || || || ||||| || ||||| Sbjct 100219 CCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAA 100278 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||| || ||||| || |||| ||||| ||||| ||| Sbjct 100279 AGAGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGATCGGGAGGA 100338 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||| || || ||||| || | ||| || ||| Sbjct 100339 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACT 100398 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || ||||| ||||| ||||||||||||||||| || ||||| Sbjct 100399 TCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 100445 Score = 111 bits (122), Expect = 3e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | || || || || || || || ||||| || |||| Sbjct 100447 CCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCA 100506 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | ||||| || || || || || | || ||||| || || Sbjct 100507 AGGGTTCGGCCGTCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGG 100566 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || |||||||||| ||| || |||||||| || | || || || Sbjct 100567 ATACCCTCCTTATCCTGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGACC 100626 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATAT 68455 || | |||||||| || || |||||||||||||||| ||| Sbjct 100627 TCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGACTAT 100667 >seq534 Length=1254335 Score = 147 bits (162), Expect = 4e-30 Identities = 140/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || |||||||| || | ||||| || | |||||| || ||||| || Sbjct 1114864 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 1114805 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 |||| |||||||| || |||||||| |||||||| || ||||| | |||||| ||| Sbjct 1114804 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1114745 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | ||||||||| || ||||| |||||||| ||||| Sbjct 1114744 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 1114686 >seq2256 Length=1610869 Score = 118 bits (130), Expect = 2e-21 Identities = 559/876 (64%), Gaps = 39/876 (4%) Strand=Plus/Plus Query 9938 GACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAG 9997 ||| || ||||||||||| || | || || |||||||||||||| |||||| |||| Sbjct 1497009 GACACCGGCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAG 1497068 Query 9998 GGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGC--GCCAAACTGCTTGGGGTAACCG 10055 ||| ||| |||||||||||| |||||||| ||| |||| ||| || || Sbjct 1497069 GGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAAAC--CTTCTCGTTGCCA 1497126 Query 10056 AGTGCTGTGAAAATG---CGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAG 10112 || || || || | || ||||| |||||||| |||||||| |||| ||||| ||| Sbjct 1497127 AGCGC---GACAAGGAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAG 1497183 Query 10113 TTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 |||||||| | | | |||||| | || || | ||| |||| || ||| ||| Sbjct 1497184 TTCATGCCGAGAAGGGCGCAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACG 1497243 Query 10173 GCTTCCTCGACGATGCTCTTTACCA----CGTCAAGGGACAGCTTGTTCTCGAGCTTCGA 10228 || || | ||| || | || | | || || | || ||| | || Sbjct 1497244 GCATCAGTAATGATATCCTGGATCATCTGCTTGCTGGCACGAC----CCTTGAGGTGAGA 1497299 Query 10229 ATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGA 10288 | ||||| |||| | ||| || ||||| || || ||||| ||||||||| Sbjct 1497300 GTGGAGGAGGCAGGCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGA 1497359 Query 10289 CAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCC 10348 || ||||||||||||||| || || || |||||||| || | | ||| | || Sbjct 1497360 GAAGGTCAGACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACC 1497419 Query 10349 GGAGAACAGAAGACCCTCCAC-GCACACCCAGGCGACGAGGCGCTCTGCGAAGGAGCGGT 10407 ||| | | |||||| || ||| | | || ||||| |||| || |||||| || Sbjct 1497420 ACTGAAGAAGATACCCTCAACAGCA-GCGAAAGCAACGAGACGCTGGGCAAAGGAGGAGT 1497478 Query 10408 CGCGCGAAAAGTAT--TTCG--AGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTC 10463 | | | || ||| |||||| | |||||||||| | | ||||| ||| Sbjct 1497479 C-CTTATCCTGGATCCATCGGATGGCCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTC 1497537 Query 10464 TCGATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGC 10523 || || || | ||||| | | | |||| || |||| || | |||| |||| Sbjct 1497538 TCAATGGCGTTAAAGAGGTAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGC 1497597 Query 10524 AGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATACGT 10583 |||||||| |||| ||||| | |||| | |||| | ||||||| ||| Sbjct 1497598 AGGGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGA 1497657 Query 10584 GCCGAGGGGTCCGTGACTTCCTCGGCA---AAGTTGTTGTTCAGGTTCTCCATCACCATG 10640 ||| |||| | || ||||| || || | | |||||||| | || || Sbjct 1497658 GCCTCGGGGATCTGGA---CCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATA 1497714 Query 10641 CCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTC 10700 ||||| | || ||||| | |||||||| || |||| ||||||| | || Sbjct 1497715 CCATCAGACGCAGCGAAGAAAGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTC 1497774 Query 10701 A----GTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCA 10756 | ||| || |||||| | ||||| | || | | |||||| | ||||| Sbjct 1497775 AGGCGGTTGTT----CCAGTCATGGAGATCCTTGGAAAGATCAATCTCCTCAGCAGTCCA 1497830 Query 10757 GAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAAT 10792 ||| | || | |||||||||||||| || |||| Sbjct 1497831 GAAGGAAGCCTCAGCCTTCTTGTACATTTGCCAAAT 1497866 >seq2167 Length=328562 Score = 107 bits (118), Expect = 4e-18 Identities = 439/677 (65%), Gaps = 39/677 (6%) Strand=Plus/Plus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||| | || ||| |||| || ||||| || || || |||||| Sbjct 172857 CGCCACTGGATGTACTCGGAAGGAGTCTTGTCGAGATGGTTATCGATGTGAGCGAAAGCG 172916 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGT-CGG 225099 ||||| | ||| || || || ||||| |||| | | ||| |||| || Sbjct 172917 TGCTGCTTAATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGAGTGGGG 172976 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || | ||| || ||||| || ||||| || |||| |||||| ||||| ||||| || || Sbjct 172977 ATGAG-CTCACCAGTGAGCACGTTGATCAGAGTAGACTTGCCAGCACCGTTGGGACCGAT 173035 Query 225160 CACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGT--TG---CTGAAGATCTCA 225214 ||| |||| ||||| || | ||| || | || || |||| | | | Sbjct 173036 GACGGCAATACGGGAGCCCAGAGAGCACTGGAAGGAGATGTCCTGGATCTGAGGCTTGGA 173095 Query 225215 GG-GCCAGTTTGGTAAGCAAAGGCCA------CGCCACGCAGCTTCATGATGGCACGGTC 225267 || |||| |||| |||| || | |||| || ||||| | | Sbjct 173096 GGTACCAG---GGTACTGGAAGGACATGTTGGTGGCACGGAG------AATGGCCTTGGC 173146 Query 225268 CTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTC 225327 ||||| | | |||||| ||||| |||||||| ||||| ||| || | | || Sbjct 173147 CTTGGTCTTGACACCCTCGAGGAAACCGGGCTCAGGGAAAGTGAACTCCATCTCGGACTC 173206 Query 225328 CTTCAGGTCGTAGTAAGA---TGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTT 225384 || ||||||||||| |||| |||| || || ||||| |||| |||||| Sbjct 173207 ACCAAGCTCGTAGTAAGACTTGGCAG--AGGGGTTGC-GGGCGACGAAGGCAGCCAGGTT 173263 Query 225385 TCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTG 225443 || || | ||||||||| | |||||| || || || ||| | ||| || Sbjct 173264 ACCCTTGTAGCGCTTGAGCTTGAAG---CGCTCGTAGTGGACGATGTGCTG-GCAGACGT 173319 Query 225444 CGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTTG 225502 ||| ||||||||||||||||| || || |||||||| | || | | | | || Sbjct 173320 TGTCGAGGAAGCCAGAGTCGTGAGAGACGATGATGGAAGTGCAAG---GGGA-GTTGATG 173375 Query 225503 AGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562 |||| | |||||| ||||| | || |||| ||||| ||||| ||||| ||| Sbjct 173376 AGGTACTCCTCGAGCCACTTAACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCAAGA 173435 Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622 ||||| || || | | | || || ||| || |||| |||||||| ||||| || Sbjct 173436 AGCAGAATATCGGGAGCCTCGAAGACGGCACGGCACAGAGCGAGCTTCATCTTCCAACCA 173495 Query 225623 CCGGACAGGGAGCCGAT 225639 || || |||| || ||| Sbjct 173496 CCAGAAAGGGCGCTGAT 173512 >seq1745 Length=1114796 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||||| | ||||||||| |||||| | |||| ||| |||||| || | | | Sbjct 272597 TAACGCCACTGAAGGTACTGGTTAGGGGTCTTCTCCAAGTGCATCTCAACGTGCTCTAGA 272656 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097 || ||||| | || | || || | |||||| |||||| || || || Sbjct 272657 GCGTGCTGCTTGATATAACCAATACGAAGGTTGGGGTGCTTCTCAACCTTTCCGGTGGTA 272716 Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157 || | ||||||||| |||| |||||| || || | |||||| ||||| ||||||||| Sbjct 272717 GGGATAGTCTCGCCGGTAAGGAGCTTGATAAGAGTCGACTTGCCAGCACCGTTGGGGCCA 272776 Query 225158 AT 225159 || Sbjct 272777 AT 272778 Score = 84.2 bits (92), Expect = 4e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGAC--GACACGTTCGTCAGGCCCTTG 225502 ||| ||||| || |||||||| || ||||||| ||| | | || | | |||| Sbjct 273067 GTCCAGGAATCCGGAGTCGTGAGAAACAATGA--GACTGGTGATGTCGGGATGAGACTTG 273124 Query 225503 AGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562 |||| | |||||| || | |||| || || | ||||| ||||||||||||||| Sbjct 273125 AGGTAGTTCTCGAGCCAAGCGATGTTGGCAACATCAAGATGGTTAGTAGGTTCGTCCAGA 273184 Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622 || || | ||||||| ||| || || || | |||| ||||||||| ||||| || Sbjct 273185 AGGAGAACGTCAGCACGCTGGAGCATAGCTCGGGCCAGAGCCAGCTTCATCTTCCAACCT 273244 Query 225623 CCGGACAGGGAGCC 225636 || || ||||| || Sbjct 273245 CCAGAAAGGGAACC 273258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921594129232880