Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233895.1_
202017-07-27] 2,454 sequences; 53,227,347 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq545 154 3e-32
seq601 134 3e-26
>seq545
Length=357985
Score = 154 bits (170), Expect = 3e-32
Identities = 165/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||||| || || ||||| ||||| |||||||| |||| ||||||||| ||| ||
Sbjct 99997 CGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTG 100056
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||||| |||||| || |||||||| ||||||||||| || || ||| ||
Sbjct 100057 CGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATACCC 100116
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||||||||| ||||||| |||| ||||| | | || || || |
Sbjct 100117 TCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGG 100176
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || |||||||| ||||||||||| ||
Sbjct 100177 GTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTG 100214
Score = 100 bits (110), Expect = 7e-16
Identities = 79/95 (83%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994
||||||||||| || ||||||||||||||||| | || ||| ||| |||||| |||||
Sbjct 100091 CTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGCGACTACAACATCCAG 100032
Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029
|| ||||| ||||||||||| ||| | |||||||
Sbjct 100031 AAGGAGTCAACTCTTCACCTCGTTCTCCGACTTCG 99997
Score = 100 bits (110), Expect = 7e-16
Identities = 142/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| || || || || || ||||| || | ||||||||| || | || | || |||
Sbjct 100462 AGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCT 100521
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| || |||||||| || ||||| || ||||||||||| ||| || || || |||
Sbjct 100522 TCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTATCC 100581
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
||||||||| ||| || |||| ||| || | | || || || | ||||| |||
Sbjct 100582 TGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTC 100641
Query 199598 TTACCCGTGAGAGTTTTCAC 199617
|| || ||||| || || ||
Sbjct 100642 TTGCCAGTGAGGGTCTTGAC 100661
Score = 93.3 bits (102), Expect = 1e-13
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| |||||||| ||||| |||||||| || | |||||| |||| | ||| | || ||
Sbjct 100744 AGAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCC 100803
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| |||||||| || | || |||||||| || ||| || || |||
Sbjct 100804 TCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCAGGGGGAATGCCCTCCTTGTCC 100863
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||| || |||| ||||| | | || || || | ||||| |||
Sbjct 100864 TGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 100923
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || | || || || || || ||
Sbjct 100924 TTGCCGGTCAAGGTCTTGACGAAGATCTG 100952
>seq601
Length=675774
Score = 134 bits (148), Expect = 3e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| |||||||| || |||||||| |||| |||||||||| || || | ||||||
Sbjct 347726 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCACTCAGGGTGCGTCCATCC 347785
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| |||||||| || || ||||| || ||||||||||| || || || || |||
Sbjct 347786 TCGAGCTGCTTGCCAGCAAAGATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 347845
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| ||| |||| |||||| | | || || || | |||||||||
Sbjct 347846 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 347905
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| |||||||| || || || ||||| ||
Sbjct 347906 TTCCCCGTGAGGGTCTTGACGAAAATCTG 347934
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178884532494418
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |