Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233895.1_
202017-07-27] 2,454 sequences; 53,227,347 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq1725 242 5e-59
seq2300 93.3 5e-14
seq2378 86.0 8e-12
>seq1725
Length=603660
Score = 242 bits (268), Expect = 5e-59
Identities = 432/629 (69%), Gaps = 6/629 (1%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||| || |||||||||||||| || || || ||||| | ||||| || ||||||||
Sbjct 245149 TCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTAGACTTGACCTCGAAGATACCC 245208
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| |||||| | | | |||||||| || ||||||||||| || || || ||||| |||
Sbjct 245209 TCCTCAATGGTAAGGAGAGAAACATCGAAGGTACCACCACCAAGATCGAAGATGAGGACG 245268
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
|| ||| | || ||||| || |||||||| || || || || || || || ||
Sbjct 245269 TTGCGCTCGCCCTCGACCTTCTTGTCAAGACCGTAGGCAATGGCGGCAGCAGTAGGCTCG 245328
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|| || || || ||| ||| || || || || | ||||| || || ||||| ||
Sbjct 245329 TTGATGATTCGGAGAACGTTGAGACCGGCGATGAGACCAGCATCCTTGGTAGCTTGACGC 245388
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| |||||||| |||||||| ||||| || || || |||| |||| ||| |||||
Sbjct 245389 TGAGAATCGTTGAAGTAGGCGGGGACAGTAACAACAGCGTTGTTGACAGTCTCGCCGAGG 245448
Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816
|| || || ||| | || ||| ||||| || | ||| | || ||||| || | |
Sbjct 245449 TAAGACTCGGCGGTCTCACGCATCTTGGTGAGGATCATGGCGGAGATCTCCTCGGGGGTG 245508
Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876
|| || || || || || || ||||| || || |||| ||| || | | |
Sbjct 245509 AAGGTCTTAGTCTCGCCCTTGAACTCAACCTCGATGTTGGGCTTA---CCACCCTTGTCG 245565
Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936
| | ||| | | | | ||||| ||| | ||||||| | || | ||||| |
Sbjct 245566 ACGATCTTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCAGGATCGGCGAACTTGCGA 245625
Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996
||||| | ||||| || || || || ||||| | |||||||||||| |||||||||
Sbjct 245626 CCGATCAATCGCTTGGCGTCGAAGACAGTGTTCTGGGGGTTCATGGCGACTTGGTTCTTG 245685
Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056
|| || || || || ||||| || | || || || ||||| | || ||||| |||
Sbjct 245686 GCGGCATCACCAATCAGACGCTC---GGTGTCGGTGAAACCGACGAATGAGGGGGTAGTT 245742
Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTC 8085
|| || || |||||||| || || || ||
Sbjct 245743 CGGTTACCCTGGTCGTTGGCGATGATATC 245771
Score = 167 bits (184), Expect = 3e-36
Identities = 368/545 (68%), Gaps = 15/545 (3%)
Strand=Plus/Minus
Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303
|| ||||| ||||| || ||||| ||||| | ||| || | |||||| | | ||
Sbjct 551113 AGGTCCTCGAAACGGGCGCGGGTGATGGACATGGTGAAGTCCTCACCGTCGAAGAGAGAG 551054
Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361
||||| |||||||| | || || || | ||| | || ||||| || |||||||| |
Sbjct 551053 TCAATCTCAATGGTGGCCTGAGCACCGCTGGAGAGA--GTACGCTTGGCACGCTCACAAG 550996
Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421
| ||||| | ||| || |||||||| | | || || | || ||||| || ||
Sbjct 550995 CAGTTCGGAGACGTCGGAGGGCACGGGCATCGCCAGAGAGGTCCTTCTTCGTCTTTCGGC 550936
Query 7422 TAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480
||||| | | |||| |||| |||| | | |||||||| | |||||||||||
Sbjct 550935 CGAACTCCTTCTTGCAGTGGTCGA-GGAGGTTGGTGTCGAAATCCTGTCCACCCAAGTGG 550877
Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540
||||| || ||||| || ||||| |||| ||| || | ||||| | | || |||
Sbjct 550876 GTATCACCAGCGGTAGCCTTGACGGTGAAGACACCACCCTGGATGTTGAGGAGGGAGACA 550817
Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTA 7600
|| || ||||||||||| || || | ||||| ||||| || | ||| | ||||
Sbjct 550816 TCGAAAGTACCACCACCGAGATCGTAGATGAGAACGTTGCGCTC--CTTCTCAG-ACTTA 550760
Query 7601 TCG------AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654
|| |||||||| || || || || || || || || || || ||||| || |
Sbjct 550759 CCGGCACCAAGACCGTAGGCAATGGCGGCGGCAGTAGGCTCGTTGATGATACGGAGGACG 550700
Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714
|| || || ||||| | | || || || || || || || || ||||| ||||||
Sbjct 550699 TTGAGACCGGCAATGGAACCGGCGTCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAG 550640
Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774
|| ||||| || | ||| || | | ||| ||||| ||||| | | || || || ||
Sbjct 550639 GCAGGGACAGTGATGACGGCCTTCTCGACCTTCTTGCCGAGCTTGGTCTCGGCAATCTCC 550580
Query 7775 TTCAT 7779
|||||
Sbjct 550579 TTCAT 550575
>seq2300
Length=1519282
Score = 93.3 bits (102), Expect = 5e-14
Identities = 169/244 (69%), Gaps = 5/244 (2%)
Strand=Plus/Minus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
||||||||| |||||||| | || || || || ||||| || ||| || ||||||||
Sbjct 598079 ATCGAAATCCTCACCACCGAGATGAGTGTCACCAGCGGTAGCCAGGACCTCGAAGATACC 598020
Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575
| |||||| | | || ||||| || ||||||||||| || || | || |
Sbjct 598019 GTCATCAATGGAGAGAAGGGAGACATCGAAGGTACCACCACCGAGATCGTA---GACGAT 597963
Query 7576 GTTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634
| || | ||| || | | | |||| || |||||||| |||||||| || || || || |
Sbjct 597962 GATC-TGTCGCTCACCGTCGGTCTTGTCAAGACCGTAGGCGATAGCGGCGGCGGTGGGCT 597904
Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694
| || | || || ||| ||| || || ||||| | | ||||| || || || ||||
Sbjct 597903 CGTTGACGATTCGGAGAACGTTGAGACCGGCAATGATACCGGCATCCTTGGTGGCCTGTC 597844
Query 7695 GTTG 7698
| ||
Sbjct 597843 GCTG 597840
Score = 86.0 bits (94), Expect = 8e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 7704 CGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATT 7763
|||| |||||||| ||||| || ||||| |||| ||||| ||||||||||| || |
Sbjct 597779 CGTTGAAGTAGGCAGGGACGGTGACGACGGCGTGGGTGACCTTCTTACCGAGGTAGCCCT 597720
Query 7764 CCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTT 7823
| |||| || ||||| ||| ||||||||| | || ||||| |||| | ||||| |
Sbjct 597719 CGGCGACCTCCTTCATCTTGCCAAGAACCATAGCAGAGATCTCCTCAGGAGTGAACTGCT 597660
Query 7824 TC 7825
||
Sbjct 597659 TC 597658
>seq2378
Length=312350
Score = 86.0 bits (94), Expect = 8e-12
Identities = 190/280 (68%), Gaps = 4/280 (1%)
Strand=Plus/Minus
Query 22490 CTCCACAAAATGAAAATACACCGTTTTACCCGCGTTCACCATATGGGGTAGCTAAATTGA 22549
||||||||| || | || | || ||||| |||||||||| || | || |||
Sbjct 45598 CTCCACAAACAGAGGAGACCTCCTTCCACCCGGTATCACCATATGCTGTTACCAAGTTGT 45539
Query 22550 TGGGATATTGGGCGACAGTTAATTATAGAGAATCATACGGTATGTTTGCATGCAATGGTA 22609
| ||| ||| | || || |||| | |||| ||||||| | ||| | |||||||
Sbjct 45538 TCCAATACTGGACTACTGTCAATTTTCGAGAGGCATACGGCTTCCATGCCTCGAATGGTA 45479
Query 22610 TAATGTTCAACCACGAATCACCGAGACGGGGTGAAAACTTCGTGACACGAAAAATAAC-A 22668
| | |||||||| |||||||||||||||||| | ||||| || || || || || |
Sbjct 45478 TTCTCTTCAACCATGAATCACCGAGACGGGGTACCACTTTCGTCACCCGCAAGATCACTA 45419
Query 22669 CTC-GGTGTCGCTAATATCAGTGCAGGTAAACAAAAATGTTTATACCTTGGTAACCTAGA 22727
||| || | |||| | ||| || || | | | || | ||| || || || ||
Sbjct 45418 CTCAAGTAGCTTTAAT-TGCCTGC-GGAAAGTTAGACTTCTTCTCCCTAGGGAATCTGGA 45361
Query 22728 TGCGAAACGAGATTGGGGTCATGCACGCGATTACGTGAAA 22767
||| ||||||||||| |||||| |||||| || ||
Sbjct 45360 CGCGGTTCGAGATTGGGGCCATGCAAAAGATTACATGCAA 45321
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635113317301360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |