Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233895.1_ 202017-07-27] 2,454 sequences; 53,227,347 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq225 239 5e-58 seq623 107 2e-18 seq2256 86.0 7e-12 >seq225 Length=1102471 Score = 239 bits (264), Expect = 5e-58 Identities = 1027/1600 (64%), Gaps = 59/1600 (4%) Strand=Plus/Minus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559 ||||| ||||| |||||||| ||||| ||| |||||||| ||||| | | || Sbjct 391763 GTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGA---- 391708 Query 109560 CTTTTGGCTAA----TTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGT 109615 ||| ||| | | ||||| || ||||| |||| | ||||| ||| | || |||| Sbjct 391707 CTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCGGCAGGGATGT 391648 Query 109616 CCACGATGTTTTGAATAGAGCCAC---CAGCCTTCACCATGAGATCCTTCATCTCTTTCG 109672 ||||| ||||| || ||| |||| | | || | | |||||| | | | Sbjct 391647 TGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTCATAGCATCGG 391591 Query 109673 ACCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTG---TTGACCACGACAAATT 109729 |||| ||||| | | | || | ||| || || | ||||| || || | Sbjct 391590 ACCACAGACCCA---TGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACT 391534 Query 109730 CACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGT 109789 ||||||| || ||||| |||||||||| | |||||||| ||||| ||||| |||| Sbjct 391533 CACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGT 391474 Query 109790 TGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849 |||| || || || | || || || ||||| ||||| | ||| |||||||| |||| Sbjct 391473 TGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGA 391414 Query 109850 GACCCTTCGTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAG 109909 || | ||||| || ||| || | | ||||| || | | || | Sbjct 391413 TGCCGTGTGTCTTGACTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAG------G 391360 Query 109910 TCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAAC 109969 || | | |||||| || || || | |||||||| || || ||||| ||||| Sbjct 391359 GCTTGACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGG 391300 Query 109970 TCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCT-AGTGCCGCATGATAC 110028 | ||| | ||||| ||| |||| || | | | || | | || || || || || Sbjct 391299 TGGAGTAGGGACCCTCCTCCTTAGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAA 391241 Query 110029 ATAGTCTCAAAAATATGAGCATTCATGAGG---CGAGACTCTTCACAGTCGAAGGGAAGA 110085 || ||||| || || || || |||| |||| ||| | |||||||| | Sbjct 391240 ATGGTCTCGAAGATCTGC---TTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATG 391184 Query 110086 CCACAAAG-AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTT 110144 | || || || || |||| || || ||||||||||| ||||||||||| || || Sbjct 391183 CG-CAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCG 391125 Query 110145 CATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAG 110204 ||||||| | ||||| | || ||||| ||| ||||||| | || || Sbjct 391124 CATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAG 391065 Query 110205 ATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTC 110264 || | ||| || ||| | || | || | | | || | | | || Sbjct 391064 GTTGCGAATAACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCATA-GCAAGCCTCAT 391006 Query 110265 CTTA-TTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTT 110323 | || |||| | ||| ||||| | ||| ||||| ||||| |||| |||||| Sbjct 391005 CGTAGTTGATGAAAGAGGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAG 390946 Query 110324 TGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCT 110383 | | ||| || | |||||| || |||| |||||| || ||| ||| | ||||| Sbjct 390945 GGGCACAGTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCT 390886 Query 110384 TCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCG 110443 | || || ||| |||||| |||||||| ||||||||| ||||| | || || || | Sbjct 390885 TTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAG 390826 Query 110444 TCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGT--TGCGTTAGCGAG 110501 |||| | || |||||||| | ||| | | || || ||| |||| | | Sbjct 390825 TCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCG--ACCCTT 390768 Query 110502 ACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACA-TCAGAAA 110560 || |||| ||||||||| ||||| |||| || |||| |||||| ||| || | | Sbjct 390767 GCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTA-ACAGTCGGCGA 390709 Query 110561 GACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCA 110620 | || || || || || | || | ||| | || || ||||| | ||||| Sbjct 390708 GGCCAGGGCACTCGTTAGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCA 390649 Query 110621 TGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCAC 110680 |||| || ||||| ||||| | || ||||||||||||| ||| |||| || | || Sbjct 390648 TGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTAC 390589 Query 110681 CTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAG- 110739 | ||||| || || || | || || | || ||| |||||||| || ||||| ||| Sbjct 390588 CGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGA 390529 Query 110740 -----ACAGCGATGGATCCCTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCAT 110794 | ||| || || ||| | | || |||||| |||||||| || ||| | Sbjct 390528 TGGCAAAAGCACCGGGTCGCTT--GTTG-CCACCCTGGTCGACATAGCGAGCAGTGTTGT 390472 Query 110795 TGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGG 110854 ||||||| | |||||||||| || || | ||| ||| || ||||| ||| || Sbjct 390471 TGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCAATGTAGG 390412 Query 110855 ACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTT 110914 | | | ||||| || ||| | | || ||||||||||| ||| ||| || Sbjct 390411 AGCCAGTAGCACGGATACGGTGCACGTTCAGGCCAATACCACCAGCCATCTTGGAGATCA 390352 Query 110915 GTGCACA-CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATT 110973 ||||| ||| |||| ||| | || || || ||||| || |||| | ||| Sbjct 390351 TGGCACAGGTCT-TGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACC 390293 Query 110974 AGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCA 111033 | |||||||| |||| || || |||| || || || |||||||| || || | ||| Sbjct 390292 AAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCA 390233 Query 111034 TGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTC 111071 || ||| ||| ||| ||||||| ||||||||| || Sbjct 390232 TGTGTGA--AGAATTTGCTGGACATCAGGTTGTATGTCTC 390195 >seq623 Length=955103 Score = 107 bits (118), Expect = 2e-18 Identities = 251/373 (67%), Gaps = 18/373 (5%) Strand=Plus/Plus Query 11592 GAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG 11651 ||||||||||||||| ||||||| |||||| | || ||| |||||||||||| Sbjct 932110 GAAACCGTCCATTTCAGTGAGAATCTGGTTCAGAGTTGCTTCCCGCTCATCGTTGCCAC- 932168 Query 11652 CATACCACCTGCCGAACGCTTCTTACCGACA-------GCGTCAATCTCATCGATGAATA 11704 || | | ||||||| | | | | | || |||||||||||||| ||||| | Sbjct 932169 CAAATCCCCTGCCGCTCTCCTGTCGCGCACGTCCAATTGCGTCAATCTCATCAATGAAGA 932228 Query 11705 CGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAA 11764 ||| || || ||| |||| | | |||| | || | ||||| | || | Sbjct 932229 TGATGCAAGGGGCGTTCTTACGTCCTTCGGCGAACAAATCTCTCACACGTGAAGGACCGA 932288 Query 11765 CACCTACGAACATCTCAACGAAGTTTG--CGGCAGAACACTGAATGAAGGGAACATTAGA 11822 |||| || ||||| |||||||| | | | || | ||||||| ||| || || ||| Sbjct 932289 CACCGACAAACATTTCAACGAACTCAGAACCGCTCA-CACTGAA-GAATGGTACTCCAGA 932346 Query 11823 CTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAG 11882 ||| || || |||| || || | |||||||| |||||||| | |||||| | | Sbjct 932347 CTCGCCGGCCGTGGCCTTGGCAAGCAATGTCTTACCGGTACCAGGAGGACCAGCTAAGAT 932406 Query 11883 GGCGCCACGGGGGATCTTGGCACC---ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAA 11939 || || || |||||||||||||| || | || | ||| |||| ||| ||||| Sbjct 932407 AGCACCTCGAGGGATCTTGGCACCTAGCTTTTCGAATT---TCTCGGGCTGCTTCAGGAA 932463 Query 11940 GTCCACAATCTCC 11952 | ||||| |||| Sbjct 932464 GCTCACAAACTCC 932476 >seq2256 Length=1610869 Score = 86.0 bits (94), Expect = 7e-12 Identities = 206/303 (68%), Gaps = 9/303 (3%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || ||||| || ||||| |||||||||||||| || |||| || || Sbjct 1497312 GGCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACC 1497371 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 |||||||| || | ||||| ||||| ||||| | || ||| |||||||| Sbjct 1497372 GGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGAT 1497431 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC---GA 119670 ||||| ||| |||||||| | ||||||| || ||||| ||| ||| || || Sbjct 1497432 ACCCTCAACAGCAGCGAAAGCAACGAGACGCTGGGC-AAAGGAGGAGTCCTTATCCTGGA 1497490 Query 119671 ACCACTTGAGAGCCCAGTTGGCCTTACGCTC-TATGCAGGGGACAGTTTGGATGGC-TTC 119728 ||| || ||||||| |||||| | || |||||||||| || | ||||| || Sbjct 1497491 TCCATCGGATGGCCCAGTCGGCCTT-CTTTCGGATGCAGGGGATGGTCTCAATGGCGTTA 1497549 Query 119729 GAAAAGTTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGT 119788 | | || | ||| | || ||||| || || | |||||||| |||||||| Sbjct 1497550 AAGAGGTAGGTTC-GCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGT 1497608 Query 119789 CTC 119791 ||| Sbjct 1497609 CTC 1497611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588957933161200