Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233895.1_ 202017-07-27] 2,454 sequences; 53,227,347 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq225 203 4e-47 seq2256 125 8e-24 seq2367 82.4 9e-11 >seq225 Length=1102471 Score = 203 bits (224), Expect = 4e-47 Identities = 1133/1781 (64%), Gaps = 53/1781 (3%) Strand=Plus/Minus Query 105551 TCAAGACTGAACTGAATTGGGCGCGCCTTTGCCTTAGATCGGAGATAGTACATCCCGGTC 105610 |||| | |||||||||| || || |||| | || || |||||||| || ||| Sbjct 391894 TCAACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTC 391835 Query 105611 TTGAGTCCTTGTTTCCACGCGTACATA-TGCATAGAAGAGAGCTTGGACATCGTTGGACT 105669 || || || | ||||| || | || | |||||| | || |||| ||| || || Sbjct 391834 TTAAGGCCAAGCTTCCA-GCCTGCAAAGTGCATACTGGTGATCTTGCCCATTGTGGGGTC 391776 Query 105670 TTCCATGAAAAGATTCAT--ACTTTGACTCTGGTCAATGAAGCGACCACGTTGTGCCGCC 105727 || |||| | |||| ||| |||| | ||||||||| ||| || | || ||| Sbjct 391775 TTTCATGTGGATGTTCAGTGACTGGGACT--GATCAATGAAGGCACCTCGATCAGCAGCC 391718 Query 105728 ATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAGAGATTCTTGATATCA 105787 || | || ||| | | ||| ||||| || || || ||| ||||| ||| Sbjct 391717 ATCTGAACGACTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCG 391658 Query 105788 TCTGGGATATCTGAGATATTTTGAATTGAACC---CCCCGCCTTGACCATGAGATCCTTC 105844 | ||||| | | || || ||||| ||||| | | || ||| || | | |||| Sbjct 391657 GCAGGGATGTTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGA---TGCGGTTCTTC 391601 Query 105845 ATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGACAATC 105904 ||| | | |||||| ||||| || | || || |||| || |||||||| | Sbjct 391600 ATAGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACC 391541 Query 105905 ACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCAT 105964 ||||| || ||||| | || | |||||||| | |||||||| || ||||| Sbjct 391540 TGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCAC 391481 Query 105965 TCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTG 106024 || || || |||| || || | ||| ||| || ||||| || || | | |||||| Sbjct 391480 TCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTG 391421 Query 106025 TTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACA---TCCCAGTCGTAGTTG--A 106079 ||||| | || | | ||||| ||||| ||| | |||||||| || | | Sbjct 391420 TTACGGATGCCGTGTGTCTTGAC---TTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCA 391364 Query 106080 GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCT 106139 | || || || |||| |||| || || || || | || | || | ||| ||||| | Sbjct 391363 GAG-GGCTTGACGTTCC-ACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCTT 391306 Query 106140 CAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATT-CACAGCTCGCCTCCAGGGATGCG 106198 || || |||| ||| | | | ||||| | ||| | || |||| ||| Sbjct 391305 TGAAGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAG-GCAGTGAGGGCAGCG 391247 Query 106199 TGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCG 106258 || || ||||| || ||||| | || | ||| || || ||| || || | Sbjct 391246 TGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGC 391187 Query 106259 TAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 106317 ||| || | || || |||| || || || |||||||| | |||||| |||| ||| Sbjct 391186 ATGCG-CAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGGTG 391128 Query 106318 TCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTT 106377 ||||| ||| || || || || || || || || || |||| ||| Sbjct 391127 GCGCATGTTACTGTTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTT 391068 Query 106378 TAGATTTTTGGTAACAATCTTTGTGATTTCATG-AAGTTTTTCATAATCAAAAGTGCGAG 106436 || || |||||| || ||| | || || || || | | ||| | || || Sbjct 391067 CAGGTTGCGAATAACAACCTGACTGACCTTGTGCAACTTCTTGA-AGTCATA---GCAAG 391012 Query 106437 TCTCTTCAT---TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 106493 ||| || | ||| | || || || | || || | ||||| ||||| || Sbjct 391011 CCTCATCGTAGTTGATGAAAGAGGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCT 390952 Query 106494 CATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCA 106553 | || | |||||| | |||||| || |||| |||||| || || || || | Sbjct 390951 CGTCAGGGGCACAGTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGA 390892 Query 106554 AATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCG 106613 ||||||||||| ||||| |||||| |||||||||||||||||| | || | || | Sbjct 390891 GGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGG 390832 Query 106614 TCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCGGCTGG-TACAATGGCGTT 106671 |||| ||||| | || ||||| || | ||| | | | | | || | || | ||| Sbjct 390831 TCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCGA- 390773 Query 106672 GGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGT 106730 ||| | |||||| |||||||||| ||| || || || |||||||| || || Sbjct 390772 --CCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAACAGT 390715 Query 106731 CGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCC 106790 ||| ||| || || || || || || | || | ||| | || || ||||| | Sbjct 390714 CGGCGAGGCCAGGGCACTCGTTAGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACAC 390655 Query 106791 GCTTCATGAAAAGGTCTGGAATCCACAGGG--ATGAAAAGAGATCTCTA-CACCGAGCCT 106847 ||||||||||||| || || ||||| |||| | |||||| || | ||| || ||| Sbjct 390654 GCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAAGG--TCACGGGCACGGA-CCT 390598 Query 106848 CTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCT 106907 | || | ||| ||||| || | ||||||||||| | || ||| | |||||| |||| Sbjct 390597 CCTCTTTACCGTGGTTCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCT 390538 Query 106908 CAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTG 106964 | || |||| || | || || ||| ||| | || | |||||||| || | Sbjct 390537 CGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAG 390478 Query 106965 TGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAA 107024 || ||| || || |||||||| |||| || ||| | ||| ||| || || || || Sbjct 390477 TGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCAA 390418 Query 107025 TACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTG 107084 | || | | || | | | || | || || |||||||| |||||| ||| | Sbjct 390417 TGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCAGGCCAATACCACCAGCCATCTTGG 390358 Query 107085 AGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGG 107144 |||| ||||| | | ||||| | ||||| || | || ||| ||||| | Sbjct 390357 AGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATAT 390298 Query 107145 CGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTG 107204 | | | ||||||| |||| || || || || || || |||||||| || || | Sbjct 390297 CAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAG 390238 Query 107205 TTGCGTGAATGAACA--TACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAAT 107262 || || |||| | | || ||||||| || ||||||||||||||| || || Sbjct 390237 AGGCATGTGTGAAGAATTTGCT--GGACATCAGGTTGTATGTCTCCAAGACTCGCTCGAT 390180 Query 107263 GTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGT 107303 || || || || || | | ||||||||| | ||||| Sbjct 390179 ATCATCACCCCAAATACCAACAGACACACGCATGATCATGT 390139 >seq2256 Length=1610869 Score = 125 bits (138), Expect = 8e-24 Identities = 334/504 (66%), Gaps = 20/504 (4%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| |||| |||||||| |||||||||||||| ||| | ||| ||||| ||||| Sbjct 1497025 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATG 1497084 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGCACCC-CAACTTGTTTGAGG 117099 ||||| || || || | || || ||| | | || || | | || ||| Sbjct 1497085 AAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTGCCAAGCGCGACA------AGG 1497138 Query 117100 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGA 117159 |||||||| | || |||||||||||| ||| ||||||||||| |||| || Sbjct 1497139 AGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGG 1497198 Query 117160 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 117219 || || || || || || |||| | | |||||| || || || | | ||| Sbjct 1497199 GCGCAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTAATGATA 1497258 Query 117220 GCGTGGATAGTTTCGGTAGTGGGTCTA---TTACGCAAAGTCTTGAAGAGCTCCACGGCA 117276 | ||||| | | | ||| | | || | || | || ||| || |||| Sbjct 1497259 TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCA 1497315 Query 117277 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGC 117336 || || ||| ||||||||||| || || || || || || |||||| || || ||| Sbjct 1497316 AAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGC 1497375 Query 117337 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 117396 |||||||| |||||||| | ||| | |||| | ||| | || ||||||||||||| Sbjct 1497376 ATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCC 1497435 Query 117397 TCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCA 117455 || ||| || || |||| || |||| ||| |||||| ||| | || | | | ||| Sbjct 1497436 TCAACAGCAGCGAAAGCAACGAGACGCTGGGCAAAGGAG-GAGTCCTTATCCTGGATCCA 1497494 Query 117456 TTTCATTGCCCATTTCGCCTTCTT 117479 | || ||||| | |||||||| Sbjct 1497495 TCGGATGGCCCAGTCGGCCTTCTT 1497518 >seq2367 Length=1117091 Score = 82.4 bits (90), Expect = 9e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 155045 ATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGG 155104 |||| || |||| || ||||| ||||||||| |||||| ||| | || || | Sbjct 49770 ATGGACGCATTGCCCCTCGATCGGGTCTCGCTTCCAAGCATTTCATTGACACAGGCGCTG 49711 Query 155105 GTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACA 155164 |||| || ||| |||| || || | ||||| ||| | |||||||| || || Sbjct 49710 GTGTCATCGATGCCGATTACCGCGGCCAGGTCAAGGTCCTGCTCTTCAACCATAACGAAT 49651 Query 155165 AAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAACTTGTCCTTGAGCGC 155217 ||||||||||| ||| | || || ||||| || |||||||| || |||||| Sbjct 49650 CCGACTTTGAGGTGAAGGAGGGCGACCGCATTGCTCAACTTGTTCTGGAGCGC 49598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589962702338960