Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233895.1_
202017-07-27] 2,454 sequences; 53,227,347 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq1725 93.3 3e-13
seq545 93.3 3e-13
seq2300 91.5 1e-12
>seq1725
Length=603660
Score = 93.3 bits (102), Expect = 3e-13
Identities = 87/111 (78%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 390901 TTAACTAATTTTCTTTGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATA 390960
||||| ||| || ||||||||||| || || ||||| || | |||||||| ||| | |
Sbjct 524882 TTAACCAATCGTCGCTGGATATAACCTGTTTCGGCAGTCTTGACTGCAGTATCAATGAGA 524823
Query 390961 CCTTCTCTTCCTGCCATAACTTGGAAGAAAAATTCCATAGGATTGAGTCCA 391011
||||||| || ||||| | |||||||||||||| ||||| |||| |||
Sbjct 524822 CCTTCTCGACCAGCCATGGCGTGGAAGAAAAATTCGCTAGGAGTGAGACCA 524772
Score = 91.5 bits (100), Expect = 1e-12
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468
||||| || || || || || || || || ||||||||||| || |||||||| | ||
Sbjct 245417 ACTGTCCCCGCCTACTTCAACGATTCTCAGCGTCAAGCTACCAAGGATGCTGGTCTCATC 245358
Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528
|| || || || ||||| || || ||||| || ||||||||||| || |||| || ||
Sbjct 245357 GCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACTGCTGCCGCCATTGCCTACGGT 245298
Query 550529 CTTGATAA 550536
||||| ||
Sbjct 245297 CTTGACAA 245290
>seq545
Length=357985
Score = 93.3 bits (102), Expect = 3e-13
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315
||| ||||| || |||||||||||| ||| || ||| ||||| || || || ||||
Sbjct 100455 GAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCG 100514
Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375
||||| ||||| ||||| ||||| || || | ||||| |||||||| || || ||
Sbjct 100515 GCCGTCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATACCCTC 100574
Query 563376 TTTATCTTGAATTTTT 563391
||||| ||||| |||
Sbjct 100575 CTTATCCTGAATCTTT 100590
>seq2300
Length=1519282
Score = 91.5 bits (100), Expect = 1e-12
Identities = 124/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 550004 GATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATT 550063
||| | ||||||||||| || ||||| ||||| ||| || || || ||||| ||| |
Sbjct 597302 GATCTTGGAACCACATACAGCTGTGTCGGTGTGATGCAGAAGGGCAAGGTTGAGATTCTC 597361
Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACAT 550123
| ||| ||||| |||||| ||| ||||| ||||| || | ||||| || ||| | |
Sbjct 597362 GTCAACGATCAGGGTAACCGAATCACTCCCTCTTACGTCGCCTTCACCGAGGATGAGCGT 597421
Query 550124 TTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTAT 550176
|| ||||| || || || || | || ||| | | ||| || || || || ||
Sbjct 597422 TTGGTTGGAGACGCCGCCAAGAACCAGGCCGCCGCTAACCCCACGAACACCAT 597474
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029166221412460
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |