Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233895.1_
202017-07-27] 2,454 sequences; 53,227,347 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq225 266 6e-66
seq2256 181 2e-40
>seq225
Length=1102471
Score = 266 bits (294), Expect = 6e-66
Identities = 812/1230 (66%), Gaps = 59/1230 (5%)
Strand=Plus/Minus
Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475
|| |||||||||||||| |||||||| |||||| ||||||||| ||| | ||||||||
Sbjct 391258 GTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTTGAG-CTCACGAGCCTCGGG 391200
Query 221476 AGAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533
|| ||||||||| ||||| | | ||||| | ||||| || ||||| || || | |
Sbjct 391199 TGACTCGAAGGGCATGCGCAG-AGCAAGGAAAG-CATCGGCAAGGCCCTGAACACCAAGA 391142
Query 221534 CCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGA 221591
|| ||||| | ||| | | |||| | ||| | || |||| || || || ||| |
Sbjct 391141 CCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGC-CTCCTGG-ACAGGGTAGTGGTTCA 391084
Query 221592 CGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGT 221651
| ||||| | ||||| ||||| || | | || | | |||| | || ||||| |
Sbjct 391083 CATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGACCTTGTGCAACTTCT--T 391026
Query 221652 GATTGAACACCAACTCGCCGC--CGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAAC 221709
|| | | ||| ||| | ||| || || | |||| | || || |
Sbjct 391025 GAAGTCATAGCAA---GCCTCATCGTAGTTGATG---------AAAGAGGGCAGAGCCAG 390978
Query 221710 GCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACA 221769
||| ||||| || || || |||||||| | |||| || || || || ||
Sbjct 390977 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAGTGCA 390918
Query 221770 GAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTC 221829
|||||| || |||||| || |||| || || || |||||| ||| || ||
Sbjct 390917 CAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATC 390858
Query 221830 CTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG 221889
|||||||||||| || || || ||||| ||| ||| | ||||| || ||| ||
Sbjct 390857 CTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAG 390798
Query 221890 TTCTCTG-GCGCTCACCGTCCT------CTTGACTGCACCCTCGGTCTTTTCATACCCGG 221942
|| |||| || | | ||| | |||| | | |||| |||||| |||
Sbjct 390797 TT-TCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTAC---- 390743
Query 221943 TATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGAC 222002
||||| | | |||| || ||||| ||| | ||||| || ||| | || |
Sbjct 390742 ---AGAGCCT--CGAACTCCTCTCCGTAACAGTCGGCGAGGCCAGGGCACTCGTTAGGGC 390688
Query 222003 ACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACA 222062
||||||| |||||| ||| | || || | || |||||| || || |||||||| |
Sbjct 390687 ACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAA 390628
Query 222063 GCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCA 222122
| || | || || || | || || |||||| |||| ||| || | ||||| |
Sbjct 390627 GGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAA 390568
Query 222123 AAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182
||||| || | |||| |||||| ||||| || |||| ||| | ||| ||||||||||
Sbjct 390567 GGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCT 390508
Query 222183 TGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACC 222241
||||||||||||| || | ||| ||| | |||||||| ||||| | || ||
Sbjct 390507 TGTTGCCACCCTGGTCGA-CATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACA 390449
Query 222242 AGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG 222301
| ||||| ||| ||||||||| || |||||| | || || | || ||| |
Sbjct 390448 ACACCGTTCGATGTACCGTTGGTACCGGCAATGTAGGAGCCAGTAGCAC---GGATACGG 390392
Query 222302 -GCA--GACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTG 222358
||| || ||| |||||||| || || ||||||||||| ||| ||||||||||
Sbjct 390391 TGCACGTTCAGGCCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTA 390332
Query 222359 TCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGA 222418
|| ||| ||||| ||| ||| ||||| | | | || || ||||| |||| ||
Sbjct 390331 TCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGG 390272
Query 222419 GATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGAC 222478
| | | || | |||||| || ||||||||| ||| ||||| ||| | || |||
Sbjct 390271 GGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGGAC 390212
Query 222479 ATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT--CTGCATGGCGC 222536
||||| | ||| ||||| | ||||| |||| | || || ||| | || | | |
Sbjct 390211 ATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAATACCAACA-GACAC 390153
Query 222537 ATCTCATGTACATGTACTGGGGCCTCTCCACA--GGACCCTTGGAGCTGGAGAGCAGGTA 222594
| | |||| ||||| ||| || | ||| ||| || | | || ||| |||||
Sbjct 390152 A-CGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCT--TGAGGAGGTA 390096
Query 222595 CGATTTTTCCAGAGTCTTGAACCCAAAGTA 222624
||| |||| ||||||||| ||||||||
Sbjct 390095 TGATCGCTCCAAAGTCTTGAAGCCAAAGTA 390066
Score = 87.8 bits (96), Expect = 3e-12
Identities = 128/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175
||| || || ||||| || || | ||| || | | ||||| | ||| || ||| | ||
Sbjct 391550 GTTGACAACCTGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGG 391491
Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235
|||| || ||||||||||||||| ||||| | || ||||| || ||||| || || |
Sbjct 391490 CTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAG 391431
Query 221236 CAGCAGACTGTTGCGCAGTCCGAATCTATTGATGGACTTTCTCAGCGTGTTCCAGTCACA 221295
||||||||||| || | ||| | | |||| || || || || | |||||| ||
Sbjct 391430 GAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTCCTCTCGAAGAGTCTCCCAGTCCCA 391371
Query 221296 G 221296
|
Sbjct 391370 G 391370
>seq2256
Length=1610869
Score = 181 bits (200), Expect = 2e-40
Identities = 392/584 (67%), Gaps = 7/584 (1%)
Strand=Plus/Minus
Query 25463 TAACACACAAAGATATAT--GGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGC 25520
||||| || | |||| || || | ||||||||||||||| | || |||||| ||
Sbjct 1497882 TAACAGACCATGATAGATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGC 1497823
Query 25521 CGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACG 25576
|| ||||||||||| ||||||| | | | |||| || || || | || |
Sbjct 1497822 TGAGGAGATTGATCTTTCCAAGGATCTCCATGACTGGAACAACCGC-CTGACTGCCGATG 1497764
Query 25577 AGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACG 25636
||||| || || || | | || ||||| || || ||||||||||| || ||||
Sbjct 1497763 AGCAGTTCTTCGTCTCTCACATCCTTGCTTTCTTCGCTGCGTCTGATGGTATTGTCAACG 1497704
Query 25637 AGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACG 25696
|||| || |||| |||||| | || || ||| | ||||| || |||||||
Sbjct 1497703 AGAACCTCGTCGAGCGATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACG 1497644
Query 25697 GTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGT 25756
| |||||||| || || || | ||||| ||| || || ||| | || |
Sbjct 1497643 GCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCT 1497584
Query 25757 ACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCA 25816
|||| | || |||| || || || ||| ||||| ||| ||| ||| |||
Sbjct 1497583 ACATCAAGGAGCCCGCCCAGCGAACCTACCTCTTTAACGCCATTGAGACCATCCCCTGCA 1497524
Query 25817 TCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCG 25876
|| | |||||| |||||||| |||||| | || | | | |||| |
Sbjct 1497523 TCCGAAAGAAGGCCGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCC 1497464
Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936
|||| || || || || |||||||| ||||| ||||| ||||| ||| | || || | |
Sbjct 1497463 AGCGTCTCGTTGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTA 1497404
Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996
|||||||||||||| || || ||||||||| ||| ||| |||||||||||||||
Sbjct 1497403 TCTTCTGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCT 1497344
Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040
| || |||||||| |||| || ||||||||||| ||| ||
Sbjct 1497343 CTCGTGATGAGGGTCTTCACACTGACTTTGCCTGCCTCCTCCAC 1497300
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928816307685760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |