Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233895.1_ 202017-07-27] 2,454 sequences; 53,227,347 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq225 253 2e-62 seq601 131 2e-25 seq545 118 1e-21 seq534 104 2e-17 >seq225 Length=1102471 Score = 253 bits (280), Expect = 2e-62 Identities = 1010/1568 (64%), Gaps = 45/1568 (3%) Strand=Plus/Minus Query 148233 TCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGC 148292 |||| ||||| | || ||| | | || || ||||| ||||| || ||||| || || Sbjct 391576 TCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGT 391517 Query 148293 CGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCG 148352 || | || | |||| || | || || || ||||||||||||||| |||||| | | Sbjct 391516 CGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAG 391457 Query 148353 GTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATT 148412 || | || || ||||| || | ||||| ||| || | ||| | | || | | Sbjct 391456 GTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACT 391397 Query 148413 TTGCGCTTCA-GAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTA 148471 | | || | ||| | ||||||||||||| || || | ||||||||||||||| | Sbjct 391396 TC-CTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGCTTGACGTTCCACATGTCGAA 391338 Query 148472 CTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGC 148531 ||| || || || |||||| || | | | | | ||| || || | | || Sbjct 391337 CTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTGGAGTAGGGACCCTCCTCCTT 391278 Query 148532 CGCCAGTTCGCA-GCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGT 148590 ||||| | ||| | || ||| || ||| |||||| |||||| || ||| ||| Sbjct 391277 AGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGT 391219 Query 148591 TGAGCAGCGCCGCCGACTCGCTT---TCGTACGGCATACGCAGCCGCACAAACGCGTCGG 148647 ||||| ||| ||| | ||| | ||||| ||||| | || || |||| Sbjct 391218 TGAGCTCACGAGCC---TCGGGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGG 391162 Query 148648 CAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCT 148707 |||||||||| || || | |||||||| ||||| ||||| | ||| || || Sbjct 391161 CAAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCT 391102 Query 148708 CGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAA 148767 || || |||||||| ||||||||||||| || ||||| | || |||| | | Sbjct 391101 GGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGA 391042 Query 148768 TTCTGCGCAGCAATTCAAAATCGTA-CTTG--TCATC-TAC--GATGCATCGGTTCACGG 148821 || ||| | | || || || | | ||||| || |||| | | || | Sbjct 391041 CCTTGTGCAACTTCTTGAAGTCATAGCAAGCCTCATCGTAGTTGATGAAAGAGGGCAGAG 390982 Query 148822 CGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGG 148881 | | |||||| || ||||| || || ||| || ||||| | |||||| | || || | Sbjct 390981 CCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAG 390922 Query 148882 CGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACG 148941 |||||| ||| || | ||| || | ||||||||| |||||||||| |||||| | Sbjct 390921 TGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGG 390862 Query 148942 CGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGA---ACC 148998 | |||||||| |||||| | || || || || ||| | || | ||| ||| Sbjct 390861 CATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACC 390802 Query 148999 GATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCT------CCTGCTCGTA-- 149050 | || | ||| || |||| | || | |||||||| ||| |||||| Sbjct 390801 AA---AGTTTCTGAGC-----CTTGATAGTCTT-GCGACCCTTGCCCTCCTTCTCGTACT 390751 Query 149051 TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTG 149110 | ||| | |||| |||||| |||| ||||| || ||| |||| || ||||||| || Sbjct 390750 TTTCGTACAGAGCC--TCGAACTCCTCTCCGTAACAGTCGGCGAGGCCAGGGCACTCGTT 390693 Query 149111 CGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCAC 149170 |||||||| |||| ||| |||||| | | || |||||||| || ||||| || | Sbjct 390692 AGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGAT 390633 Query 149171 CCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAG 149230 ||| || ||| | ||||| || || | || || || ||| || || Sbjct 390632 CCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAG 390573 Query 149231 GTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTT 149290 | || | ||| | || | |||||| ||||| | ||| | || | || || Sbjct 390572 ATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGG 390513 Query 149291 GCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGG 149347 |||||| || ||||||||||| | ||| | ||||||| || || |||| |||||| Sbjct 390512 TCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGG 390453 Query 149348 TTCAATGCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTT 149407 ||| || | | || ||||| ||| | |||| ||| || || | Sbjct 390452 AACAACACCGTTCGATGTACCGTTGGTACCGGCAATGTAGGAGCCAGTAGCACGGATACG 390393 Query 149408 GTGCACGTTGACGCCGATGCCGCC-GCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCG 149466 ||||||||| | ||| || || || ||| | ||| ||||| || ||| ||| | Sbjct 390392 GTGCACGTTCAGGCCAATACCACCAGCCAT-CTTGGAGATCATGGCACAGGTCTTGAGAG 390334 Query 149467 TCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTT 149526 | |||||| ||||| || |||||| |||||| | || ||||| || ||| || Sbjct 390333 TATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATT 390274 Query 149527 GCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTT-CTGG 149585 | || | | |||||||| ||| | ||||| ||| ||||| || |||| |||| Sbjct 390273 GGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGG 390214 Query 149586 CTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCG 149645 ||||| | ||| | ||| | || || || || ||||| || || || | | Sbjct 390213 -ACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAATACCAACAGAC 390155 Query 149646 ACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAG 149705 || ||||| | ||| ||||| || ||||| | | || |||| ||||| | ||| Sbjct 390154 ACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGAGGAGGTAT 390095 Query 149706 CCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGGTCAATG 149765 || | |||||| |||||||||| | ||| | || |||||| | | | ||||| Sbjct 390094 GATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATG 390035 Query 149766 GCGGCGTC 149773 || | ||| Sbjct 390034 GCAGAGTC 390027 >seq601 Length=675774 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || | || ||| | | | |||||||||||||||| Sbjct 347740 GGTGGACTCCTTCTGGATGTTGTAGTCACTCAGGGTGCGTCCA-TCCTCGAGCTGCTTGC 347798 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || ||||||||||| || |||||||| |||||||| |||||| || Sbjct 347799 CAGCAAAGATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACT 347858 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| | |||||| || | ||||| || || || || || | Sbjct 347859 TGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGG 347918 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||||||||| Sbjct 347919 TCTTGACGAAAATCTGCAT 347937 >seq545 Length=357985 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || |||||||| | ||| |||||| ||||||||||| Sbjct 100759 GTAGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCG 100818 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| |||| | || |||||||| || || ||||| |||||||| ||||| |||| Sbjct 100819 GCGAAAATCAAGCGTTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTG 100878 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||||| | ||| || |||| ||||| ||| |||||||||| || Sbjct 100879 ACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTC 100938 Query 133644 TTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 100939 TTGACGAAGATCTGCATG 100956 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| |||| || ||| ||| | || || | |||||| || Sbjct 100021 GTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCA-TCTTCCAACTGCTTACC 100079 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||| || || || || || |||||||| ||||| ||| Sbjct 100080 AGCGAAGATAAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTGCTCTT 100139 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| ||| ||| || || | ||||| ||| || ||||| ||||| Sbjct 100140 CACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTGAGAGT 100199 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 100200 CTTCACAAAAATCTGCAT 100217 >seq534 Length=1254335 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 |||||||||||||| || ||| | || || ||||| ||||| || || ||||| |||||| Sbjct 1114831 TCCTCGAGCTGCTTACCAGCGAAGATCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTG 1114772 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | ||||| | || ||| || |||| ||||| | Sbjct 1114771 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATG 1114712 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAA 133652 || ||||| ||||| || || |||||| Sbjct 1114711 GTCTTGCCCGTCAGGGTCTTCACGAAA 1114685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483405971066960