Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233895.1_
202017-07-27] 2,454 sequences; 53,227,347 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq2256 187 4e-41
seq225 114 2e-19
>seq2256
Length=1610869
Score = 187 bits (206), Expect = 4e-41
Identities = 354/507 (70%), Gaps = 12/507 (2%)
Strand=Plus/Minus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| || ||||| ||||| ||||| ||||| || |||||| | || |
Sbjct 1497867 GATTTGGCAAATGTAC-AAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATC 1497809
Query 1455835 TCGGCGCCGA-CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATC 1455890
| | || | | | ||||| ||| ||| | ||| |||| ||| ||
Sbjct 1497808 TTTCCAAGGATCTCCATG-ACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTCGTC 1497750
Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGG 1455950
||| |||| || ||| ||||| || ||||| || || ||||||||| | ||
Sbjct 1497749 TCTCACATCCTTGC-TTTCTTCGCTGCGTCTGATGGTATTGTCAACGAGAACCTCGTCGA 1497691
Query 1455951 CCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010
|| || | |||||||| | || ||||| |||| || ||||| |||||||||
Sbjct 1497690 GCGATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCAT 1497631
Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070
|| || ||||||||||| || |||||||| || || || ||||||||| ||||||| ||
Sbjct 1497630 GATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCC 1497571
Query 1456071 GGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGG 1456129
| | || | ||| |||||||| |||||| || || | || | | | || ||||
Sbjct 1497570 CGCCCAGC-GAACCTACCTCTTTAACGCCATTGAGACCATCCCCTGCATCCGAAAGAAGG 1497512
Query 1456130 CCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGT 1456189
|||||||||| || |||||| | | | || ||| | ||||||| |||| |||||
Sbjct 1497511 CCGACTGGGCCATCCGATGGATCCAGGA-TAAGGACTCCTC-CTTTGCCCAGCGTCTCGT 1497454
Query 1456190 CGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCT 1456248
| || || || || ||||| ||||| ||| || ||| | | ||||| |||||
Sbjct 1497453 TGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCT 1497394
Query 1456249 CAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
||||||||| || ||||||||||||||
Sbjct 1497393 CAAGAAGCGTGGTCTCATGCCCGGTCT 1497367
Score = 86.0 bits (94), Expect = 9e-11
Identities = 168/243 (69%), Gaps = 4/243 (2%)
Strand=Plus/Minus
Query 1456532 GAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGGC 1456591
|| |||||| || ||| | ||||| ||| ||| | || || || || |||||
Sbjct 1497248 GATGCCGTCACCATTGAGCAGGAGTTCCTCACTGAGGCTCTTCCCTGCGCCCTTCTCGGC 1497189
Query 1456592 ATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCGG 1456651
|||||| | | |||||| ||||||||||| || ||||| || || || || | |
Sbjct 1497188 ATGAACTCTGAC-CTCATGAAGCAGTACATTGAGTTC-GTCGCTGATCGTCTCCTTGTCG 1497131
Query 1456652 CGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGATC 1456711
|||| ||| || ||||| ||| | | ||||||| ||| | |||||| |||
Sbjct 1497130 CGCTTGGCAACG-AGAAGGTTTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATC 1497072
Query 1456712 TCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCCAAGGCCGGC 1456770
|| |||| |||||||||||||| |||||| || | || ||| ||| ||||||||
Sbjct 1497071 TCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGACTACCAGAAGGCCGGT 1497012
Query 1456771 GTC 1456773
|||
Sbjct 1497011 GTC 1497009
>seq225
Length=1102471
Score = 114 bits (126), Expect = 2e-19
Identities = 180/258 (70%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984
||||||||||| || |||||||| || | || || || || ||||| || | ||
Sbjct 390240 CCCACGCTCTTCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGAT 390299
Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044
||||||| ||| || ||||| ||||| || || |||||| || || | ||||||
Sbjct 390300 ATGAAGGACGACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCC 390359
Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104
||| ||| || || || || | || ||| | || || | ||| ||||| |
Sbjct 390360 AAGATGGCTGGTGGTATTGGCCTGAACGTGCACCGTATCCGTGCTACTGGCTCCTACATT 390419
Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164
|| || |||||||| || ||||| |||| || |||||||| || || ||| ||||
Sbjct 390420 GCCGGTACCAACGGTACATCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACT 390479
Query 260165 GCGCGCTACGTCGACCAG 260182
|| ||||| |||||||||
Sbjct 390480 GCTCGCTATGTCGACCAG 390497
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177574507189548
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |