Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233895.1_ 202017-07-27] 2,454 sequences; 53,227,347 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq601 122 9e-23 seq545 122 9e-23 >seq601 Length=675774 Score = 122 bits (134), Expect = 9e-23 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 134481 GCCTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAG 134540 ||| | || || | ||| || | || ||||| || ||||| ||||| || ||||||||| Sbjct 347705 GCCATACCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAG 347764 Query 134541 TCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCG 134600 || | | |||| | || |||||||| ||||| ||||| || | |||||||| || Sbjct 347765 TCACTCAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGTCGCTGCTGGTCA 347824 Query 134601 GGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGAT 134660 || || ||||| || || || || || || ||||| ||| | |||||||| || Sbjct 347825 GGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGAC 347884 Query 134661 TCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || || || || || || || || | || || |||||||| ||||| ||| Sbjct 347885 TCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTG 347941 >seq545 Length=357985 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || ||||| || || || ||||| ||||||||||| || Sbjct 100729 CCACCACGGAGGCGGAGAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGAG 100788 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| || ||||| ||||| || |||||||| || ||||| || || || Sbjct 100789 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCAGGGGGA 100848 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| || ||||| ||| | |||||||| || || || Sbjct 100849 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACC 100908 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || ||||| || || || ||||| || ||||| Sbjct 100909 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 100955 Score = 116 bits (128), Expect = 4e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||||| || || || |||||||| ||||||||||||||| || Sbjct 100447 CCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCA 100506 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| ||||| || || || ||||| |||| |||||||| || || || Sbjct 100507 AGGGTTCGGCCGTCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGG 100566 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || ||||| ||| || || ||| | || |||||||| || || Sbjct 100567 ATACCCTCCTTATCCTGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGACC 100626 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 || ||||| ||||| || || || | || || |||| Sbjct 100627 TCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 100663 Score = 105 bits (116), Expect = 7e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 ||||| | |||||||| || || || ||||| || ||||||||||||| | |||| || Sbjct 100000 AGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGA 100059 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || | ||| || || || || || | |||||||||||| || || || || || Sbjct 100060 CCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATACCCTCC 100119 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || || || ||| | ||||| || || || || || || Sbjct 100120 TTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTG 100179 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| | ||| || || ||||| ||||| Sbjct 100180 ATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 100217 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || |||||||| ||||||||||||||| || || | || || || || Sbjct 100242 GTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCAAGTTG 100301 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || || | ||||| |||||||| || || || || || || || || || Sbjct 100302 CTTGCCAGCGAAGATAAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCCTGGATCTT 100361 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || || | || ||||| || || || || ||||||||||| || || || Sbjct 100362 GCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTTTCCAGT 100421 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | || || ||||| |||||||| Sbjct 100422 GAGGGTCTTGACGAAGATTTGCAT 100445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505382896904080