Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233895.1_
202017-07-27] 2,454 sequences; 53,227,347 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq545 114 1e-20
>seq545
Length=357985
Score = 114 bits (126), Expect = 1e-20
Identities = 144/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || || ||||||||||||| | |||| | ||||| | ||| |||||
Sbjct 100021 GTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCTTCCAACTGCTTACCA 100080
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | || |||||||| ||||| || || | |||||| || || |||||| | |||
Sbjct 100081 GCGAAGATAAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTGCTCTTC 100140
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | |||||| ||| || || || || || || | || || || |||||
Sbjct 100141 ACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTC 100200
Query 27231 TTCACAAAGATTTGCATA 27248
|||||||| || ||||||
Sbjct 100201 TTCACAAAAATCTGCATA 100218
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| || | ||||| || || ||||| ||||||||| | | || | || ||
Sbjct 100237 ACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCA 100296
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
|| || || || ||| | || || ||||||||||| || || | |||||| || || |
Sbjct 100297 AGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCCTGG 100356
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|||||| | |||| | || | || || | | || ||||| ||||| || | ||
Sbjct 100357 ATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTTT 100416
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248
|| || || || || || ||||||||||||
Sbjct 100417 CCAGTGAGGGTCTTGACGAAGATTTGCATA 100446
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424921691008848
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |