Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233895.1_ 202017-07-27] 2,454 sequences; 53,227,347 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq225 255 7e-63 seq2256 147 3e-30 >seq225 Length=1102471 Score = 255 bits (282), Expect = 7e-63 Identities = 1143/1783 (64%), Gaps = 41/1783 (2%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| ||||| ||||||| ||| | | |||||| || || || || || || Sbjct 390131 CCCTCAGCACATGATCATGCGTGTGTCTGTTGGTATTTGGGGTGATGATATCGAGCGAGT 390190 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTA--TGTTCATTCACGCAACACCAACCCTC 104338 ||||||||||||| || ||||||| || | | |||| || || | || || ||| Sbjct 390191 CTTGGAGACATACAACCTGATGTCC--AGCAAATTCTTCACACATGCCTCTCCCACGCTC 390248 Query 104339 TTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAG 104398 ||||| || || || || |||||| |||| ||||||| | | | | ||||| Sbjct 390249 TTCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGAC 390308 Query 104399 GACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCT 104458 ||| || | || ||||| | ||||| | | ||||| ||||| ||| |||| Sbjct 390309 GACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCT 390368 Query 104459 GGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACA 104518 || |||||||| || || | || | | | || | | || ||| || || Sbjct 390369 GGTGGTATTGGCCTGAACGTGCACCGTATCCGTGCTACTGGCTCCTACATTGCCGGTACC 390428 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || ||| ||| | ||| || |||| |||||||| || || ||| ||| || |||||| Sbjct 390429 AACGGTACATCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCTAT 390488 Query 104579 GTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 || | || | ||| ||| || || | || |||| || ||||| |||||| Sbjct 390489 GTCGACCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCAC 390548 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC 104695 | ||| || | ||||||||||| | ||| ||||| ||| | ||||||| || | Sbjct 390549 TCTGATGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCCGTGCC 390608 Query 104696 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 104755 || || || ||| ||| || ||||| || ||||| ||||||||| | ||||| ||| Sbjct 390609 CGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAAC 390668 Query 104756 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGT--GGGTG 104813 ||| | ||| | || | || || || || ||||| ||| |||| | || || | Sbjct 390669 GGCGACTGGACGCTGATGTGCCCTAACGAGTGCCCTGGCCTCGCCGA--CTGTTACGGAG 390726 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACGGT 104871 ||||||| || || || ||| ||||||||| |||| ||| | | | | || ||| | Sbjct 390727 AGGAGTTCGAGGCTCTGTACGAAAAGTACGA-GAAGGAGGGCAAGGGTC-GCAAGACTAT 390784 Query 104872 GCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 104931 ||| | | ||| | || ||||| || | || || ||||| || | |||| Sbjct 390785 CAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAACCCATT 390844 Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991 |||||| ||||| || ||||| |||| ||||| || |||||||| | ||| ||| Sbjct 390845 CATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCATCCG 390904 Query 104992 GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 105051 || ||||| || || || ||||| | || | | | || ||| ||||| || Sbjct 390905 AAGCTCCAACCTGTGCACTGAAATTATTGAGTACTGTGCCCCTGACGAGGTCGCTGTCTG 390964 Query 105052 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG--AT 105109 ||||| || || | ||||| ||| | | | || || || | || ||| || Sbjct 390965 CAACCTTGCCTCTCTGGCTCTGCCC---TCT-TTCAT-CAACTACGATGAGGCTTGCTAT 391019 Query 105110 TA--TGAA-AAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166 | | || || | ||| | || | | ||| | ||||| |||| | || Sbjct 391020 GACTTCAAGAAGTTGCACAAGGTCAGTCAGGTTGTTATTCGCAACCTGAACAAGATCATC 391079 Query 105167 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226 ||| || ||||| || || ||||| || ||| ||| | ||||| || ||| Sbjct 391080 GATGTGAACCACTACCCTGTCCAGGAGGCTCGCAACAGTAACATGCGCCACCGACCCATT 391139 Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATTC 105285 ||||| ||||||||||| || || |||| ||| || || || ||| | || || || Sbjct 391140 GGTCTTGGTGTTCAGGGCCTTGCCGATGCTTTCCTTGCTCTG-CGCATGCCCTTCGAGTC 391198 Query 105286 CGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA 105345 ||| || || |||| || || || |||||||| || ||||| || || Sbjct 391199 ACCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGACCATTTACCACGCTGCCCTCAC 391258 Query 105346 GGC--GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCA 105403 || || | || |||| ||| || ||||| || ||||| | ||||| || Sbjct 391259 TGCCTCCGTGC--AGCTGGCTAAGGAGGAGGGTCCCTACTCCACCTTCAAAGGTTCCCCC 391316 Query 105404 GCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGAC 105463 || || | || | || || || || |||||| | | || || | || ||| Sbjct 391317 GCCTCTGAGGGTATCCTCCAGTTCGACATGTGGAACGTCAAGCCCTCTGACCTCTGGGAC 391376 Query 105464 TGGGAAGCTC-TCAAG-GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521 ||||| ||| || || | | | ||||| | || | ||||||||||| ||| | | Sbjct 391377 TGGGAGACTCTTCGAGAGGAAG--TCAAGACACACGGCATCCGTAACAGTCTGCTCCTTG 391434 Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581 |||| ||||| || ||| ||| | || || |||| || || || ||||| || |||| Sbjct 391435 CTCCTATGCCTACTGCCAGTACCTCCCAGATTCTGGGCAACAACGAGTGCTTCGAGCCCT 391494 Query 105582 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 105641 |||| | |||||||| | || | ||||| || ||||| | |||||||| Sbjct 391495 ACACCTCCAACATCTACCAACGACGTGTTCTCGCTGGTGAGTTCCAGGTTGTCAACCCCT 391554 Query 105642 ATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGG 105701 || | | ||||| || || ||||| |||||| | | ||||||| | | ||| Sbjct 391555 GGCTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCCGATGCTATGAAGAACCGCATCA 391614 Query 105702 TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGT 105761 | | | |||||||||||| || ||| | || || || | ||| ||| Sbjct 391615 TTGCTGAGAATGGTTCCATTCAGAACATTCCCAACATCCCTGCCGATGTCAAGGCTCTGT 391674 Query 105762 ACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 105821 | || |||||||| ||| | | ||| || | ||||| || ||||| ||| Sbjct 391675 ATAAGACCGTTTGGGAGATCTCTCAGCGCCAAGTCGTTCAGATGGCTGCTGATCGAGGTG 391734 Query 105822 GCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGATGTCCAA 105879 ||||||||||| |||| ||| |||| || |||| || || || ||| ||| Sbjct 391735 CCTTCATTGATC--AGTCCCAGTCACTGAACATCCACATGAAAGACCCCACAATGGGCAA 391792 Query 105880 GCTCTCTTCTATGCACATGTACA-GTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACC 105938 | || | ||||||| | | || | |||||| || || || || || ||||| |||| Sbjct 391793 GATCACCAGTATGCAC-TTTGCAGGCTGGAAGCTTGGCCTTAAGACTGGCATGTACTACC 391851 Query 105939 TCCGATCTAAGGCAAAGGCGCGCCCAATTCAGTTCAGTCTTGA 105981 | || | |||| || || |||||||||| | |||| Sbjct 391852 TTCGTACACAGGCTGCTGCTGCTCCTATTCAGTTCACTGTTGA 391894 >seq2256 Length=1610869 Score = 147 bits (162), Expect = 3e-30 Identities = 180/243 (74%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 |||||| | ||||| | || | || || || | |||||| || || ||||| || Sbjct 1497554 CTCTTTAACGCCATTGAGACCATCCCCTGCATCCGAAAGAAGGCCGACTGGGCCATCCGA 1497495 Query 94774 TGGTTTGAT-ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 94832 ||| | | | || | | | | ||||||| |||| ||| | || || || |||||| Sbjct 1497494 TGGATCCAGGATAAGGACTCCT-CCTTTGCCCAGCGTCTCGTTGCTTTCGCTGCTGTTGA 1497436 Query 94833 GGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCAT 94892 ||||||||||||| |||| ||||| | |||| | |||||||||||||| |||||||| Sbjct 1497435 GGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCAT 1497376 Query 94893 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTT 94952 ||| ||||| ||||||||||||||| ||||||||||| ||||| || ||| || || Sbjct 1497375 GCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCACACTGACTT 1497316 Query 94953 TGC 94955 ||| Sbjct 1497315 TGC 1497313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583242908474960