Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233895.1_ 202017-07-27] 2,454 sequences; 53,227,347 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq545 159 1e-33 seq1725 150 5e-31 seq601 111 5e-19 >seq545 Length=357985 Score = 159 bits (176), Expect = 1e-33 Identities = 176/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | || |||||||| || || ||||| || || || Sbjct 100215 CATACCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTC 100274 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | ||||| ||||| |||||||| || ||||| ||||| || || || ||||| || Sbjct 100275 GGAAAGAGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGATCGGG 100334 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 |||||| || || || ||||| || || ||| || ||||||||||| | ||| |||| | Sbjct 100335 AGGAATACCCTCCTTGTCCTGGATCTT-GCTCTTCACATTATCAATGGTATCGGATGACT 100393 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| || |||| |||||||| || || || || || || || ||||| Sbjct 100394 CGACTTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 100445 Score = 149 bits (164), Expect = 2e-30 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | |||||||| |||||||||||||| || ||||| || | Sbjct 100721 TTTGCATACCACCACGGAGGCGGAGAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGT 100780 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 ||||||| | || || || || ||||| || || || || || || | |||||||| | Sbjct 100781 AATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGT 100840 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| ||||| || || || |||||||| || | || ||||| || || | || || | Sbjct 100841 CAGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAG 100900 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || || || | ||||| ||||| | || || || || |||||||| Sbjct 100901 ACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 100955 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || |||||||| ||||| || || ||||| || | Sbjct 100439 TTTGCATACCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGT 100498 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | ||||| || ||||| ||||| |||||||||||||| || || ||||| | Sbjct 100499 AGTCGGCAAGGGTTCGGCCGTCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGT 100558 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 ||||||| || || || ||||||||||| || | || ||||| || || | ||| || | Sbjct 100559 CAGGAGGGATACCCTCCTTATCCTGAATCTTTGACTTAACATTGTCGATGGTATCGGACG 100618 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || ||||| || | ||||| || || || || || || Sbjct 100619 ACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 100661 Score = 138 bits (152), Expect = 3e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 ||||| || | || ||||| || |||||||| ||||| || || || || || || Sbjct 99991 CCACCGCGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTC 100050 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 || || || |||||||| | || || ||||| ||||| ||||| ||||||||||| ||| Sbjct 100051 AAGGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGA 100110 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || |||||||| || ||| || || || || || | ||| | || || Sbjct 100111 ATACCCTCCTTGTCCTGAATCTT-GCTCTTCACGTTGTCGATAGTGTCACTGGACTCGAC 100169 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||||||||| || || || |||||||||||||| Sbjct 100170 CTCAAGGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 100217 >seq1725 Length=603660 Score = 150 bits (166), Expect = 5e-31 Identities = 441/672 (66%), Gaps = 17/672 (3%) Strand=Plus/Minus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || || || || || || |||||| |||| || || |||| ||| | || ||||| Sbjct 245771 GATATCATCGCCAACGACCAGGGTAACCGAACTACCCCCTCATTCGTCGGTTTCACCGAC 245712 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| ||||||||||| | || || || |||| || || || | || || Sbjct 245711 ACCGAGCGTCTGATTGGTGATGCCGCCAAGAACCAAGTCGCCATGAACCCCCAGAACACT 245652 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACACAA 349435 || || || || |||||| | || ||| | ||||| | |||| || || Sbjct 245651 GTCTTCGACGCCAAGCGATTGATCGGTCGCAAGTTCGCCGATCCTGAGG--TC----CAG 245598 Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT 349495 | || | || || || || || | | || | | ||| |||| ||| || | || Sbjct 245597 GCCGACATGAAGCACTTCCCCTTCAAGATCGT-CGACAAG--GGTGGTAAGCCCAACATC 245541 Query 349496 GAGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGT 349554 |||||||| | || || || || || || || ||||| || || || | ||| | Sbjct 245540 GAGGTTGAGTTCAAGGGCGAGACTAAGACC-TTCACCCCCGAGGAGATCTCCGCCATGAT 245482 Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614 | || ||| || | || || | || | || || || || | | ||||| Sbjct 245481 CCTCACCAAGATGCGTGAGACCGCCGAGTCTTACCTCGGCGAGACTGTCAACAACGCTGT 245422 Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674 | ||||||| || ||||| || || ||| | |||||| || || || |||||||| Sbjct 245421 TGTTACTGTCCCCGCCTACTTCAACGATTCTCAGCGTCAAGCTACCAAGGATGCTGGTCT 245362 Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734 ||| || || | || ||||| |||| || || || || |||||||| || ||||| || Sbjct 245361 CATCGCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACTGCTGCCGCCATTGCCTA 245302 Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 || ||||| || | | || || || | || || || ||| | |||||||| Sbjct 245301 CGGTCTTGACAAGAAGGTCGAGGGCGAGCGCAACGTCCTCATCTTCGATCTTGGTGGTGG 245242 Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854 ||| || ||||| || || || || |||| ||||| || || || || || | || || Sbjct 245241 TACCTTCGATGTTTCTCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACCGC 245182 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914 |||||| || || | ||||| || || || || || ||||| || || || || || Sbjct 245181 TGGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTCGTAAA 245122 Query 349915 AGAATTTAAGCG 349926 ||||| ||||| Sbjct 245121 CGAATTCAAGCG 245110 Score = 120 bits (132), Expect = 9e-22 Identities = 193/276 (70%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 378201 ATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGC 378260 |||||| | || |||| | |||||| |||||||| |||| ||| || ||||| Sbjct 524895 ATCTTCCAGAGCCTTAACCAATCGTCGCTGGATATAACCTGTTTCGGCAGTCTTGACTGC 524836 Query 378261 AGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAG 378320 ||||||||| | ||| | |||||| |||| || |||||||| ||||| ||||||| || Sbjct 524835 AGTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAAAATTCGCTAGGAGTGAG 524776 Query 378321 TCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGT 378380 |||| | | || |||| | || || | || | || || | ||| | || || Sbjct 524775 ACCACGGAGGTAAGAGTTCTCGACGAAGCCACGGGCCTCAGGTGAGTAATCGTCCTTGGT 524716 Query 378381 ATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTG 378440 | ||||||||||| |||| || || ||| | ||||| || || || || ||| | || Sbjct 524715 GAAGTGAGGTAATGTGCGATACTTGAAACCAAAAGGAATACGCTTGCCTTCGACAATTTG 524656 Query 378441 TTGAC---CAAGTGCAGAAACCATTTGAGCAATATT 378473 |||| |||| |||| |||||||| |||||| Sbjct 524655 CTGACCGACAAGCGCAG---TCATTTGAGAAATATT 524623 Score = 113 bits (124), Expect = 1e-19 Identities = 105/133 (79%), Gaps = 3/133 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 |||||||||||| | ||||| ||| || || | |||||||| || ||||| || || Sbjct 525656 CGTGGCACACCAAGAGTAACGTTC---TTGGACGAGACACCAGCGAAATGGAAGGTGTTC 525600 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | ||||||| ||||||||||| |||||||| || | ||| ||||||||||| Sbjct 525599 AGTGTCATCTGAGTAGCAGGCTCACCAATAGACTGCGCAGCCAGAACACCAACCATTTCA 525540 Query 377578 CCAGGATTGACAA 377590 ||||| ||||||| Sbjct 525539 CCAGGGTTGACAA 525527 >seq601 Length=675774 Score = 111 bits (122), Expect = 5e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || || || || || || Sbjct 347707 CATACCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 347766 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || ||||| || || || || ||||||||||| || || ||||| ||||| Sbjct 347767 ACTCAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGTCGCTGCTGGTCAGG 347826 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || ||||| || || | || || || || || | || || | || Sbjct 347827 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTC 347886 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || || ||||||||||| Sbjct 347887 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 347937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515206757560562