Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233895.1_
202017-07-27] 2,454 sequences; 53,227,347 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq545 159 1e-33
seq1725 150 5e-31
seq601 111 5e-19
>seq545
Length=357985
Score = 159 bits (176), Expect = 1e-33
Identities = 176/232 (76%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | ||||| | || |||||||| || || ||||| || || ||
Sbjct 100215 CATACCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTC 100274
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | ||||| ||||| |||||||| || ||||| ||||| || || || ||||| ||
Sbjct 100275 GGAAAGAGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGATCGGG 100334
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685
|||||| || || || ||||| || || ||| || ||||||||||| | ||| |||| |
Sbjct 100335 AGGAATACCCTCCTTGTCCTGGATCTT-GCTCTTCACATTATCAATGGTATCGGATGACT 100393
Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| ||||| || |||| |||||||| || || || || || || || |||||
Sbjct 100394 CGACTTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 100445
Score = 149 bits (164), Expect = 2e-30
Identities = 174/235 (74%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | |||||||| |||||||||||||| || ||||| || |
Sbjct 100721 TTTGCATACCACCACGGAGGCGGAGAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGT 100780
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
||||||| | || || || || ||||| || || || || || || | |||||||| |
Sbjct 100781 AATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGT 100840
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
|||| ||||| || || || |||||||| || | || ||||| || || | || || |
Sbjct 100841 CAGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAG 100900
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || || || | ||||| ||||| | || || || || ||||||||
Sbjct 100901 ACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 100955
Score = 145 bits (160), Expect = 2e-29
Identities = 166/223 (74%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | || || |||||||| ||||| || || ||||| || |
Sbjct 100439 TTTGCATACCACCACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGT 100498
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || | | ||||| || ||||| ||||| |||||||||||||| || || ||||| |
Sbjct 100499 AGTCGGCAAGGGTTCGGCCGTCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGT 100558
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
||||||| || || || ||||||||||| || | || ||||| || || | ||| || |
Sbjct 100559 CAGGAGGGATACCCTCCTTATCCTGAATCTTTGACTTAACATTGTCGATGGTATCGGACG 100618
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
|| || ||||| || | ||||| || || || || || ||
Sbjct 100619 ACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 100661
Score = 138 bits (152), Expect = 3e-27
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570
||||| || | || ||||| || |||||||| ||||| || || || || || ||
Sbjct 99991 CCACCGCGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTC 100050
Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630
|| || || |||||||| | || || ||||| ||||| ||||| ||||||||||| |||
Sbjct 100051 AAGGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGA 100110
Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTTCAAC 140689
|| || || || |||||||| || ||| || || || || || | ||| | || ||
Sbjct 100111 ATACCCTCCTTGTCCTGAATCTT-GCTCTTCACGTTGTCGATAGTGTCACTGGACTCGAC 100169
Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||||| || | ||||||||||| || || || ||||||||||||||
Sbjct 100170 CTCAAGGGTGATGGTCTTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 100217
>seq1725
Length=603660
Score = 150 bits (166), Expect = 5e-31
Identities = 441/672 (66%), Gaps = 17/672 (3%)
Strand=Plus/Minus
Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321
|| || || || || || || |||||| |||| || || |||| ||| | || |||||
Sbjct 245771 GATATCATCGCCAACGACCAGGGTAACCGAACTACCCCCTCATTCGTCGGTTTCACCGAC 245712
Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381
|| |||||| ||||||||||| | || || || |||| || || || | || ||
Sbjct 245711 ACCGAGCGTCTGATTGGTGATGCCGCCAAGAACCAAGTCGCCATGAACCCCCAGAACACT 245652
Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTACACAA 349435
|| || || || |||||| | || ||| | ||||| | |||| || ||
Sbjct 245651 GTCTTCGACGCCAAGCGATTGATCGGTCGCAAGTTCGCCGATCCTGAGG--TC----CAG 245598
Query 349436 TCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATT 349495
| || | || || || || || | | || | | ||| |||| ||| || | ||
Sbjct 245597 GCCGACATGAAGCACTTCCCCTTCAAGATCGT-CGACAAG--GGTGGTAAGCCCAACATC 245541
Query 349496 GAGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGT 349554
|||||||| | || || || || || || || ||||| || || || | ||| |
Sbjct 245540 GAGGTTGAGTTCAAGGGCGAGACTAAGACC-TTCACCCCCGAGGAGATCTCCGCCATGAT 245482
Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614
| || ||| || | || || | || | || || || || | | |||||
Sbjct 245481 CCTCACCAAGATGCGTGAGACCGCCGAGTCTTACCTCGGCGAGACTGTCAACAACGCTGT 245422
Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674
| ||||||| || ||||| || || ||| | |||||| || || || ||||||||
Sbjct 245421 TGTTACTGTCCCCGCCTACTTCAACGATTCTCAGCGTCAAGCTACCAAGGATGCTGGTCT 245362
Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734
||| || || | || ||||| |||| || || || || |||||||| || ||||| ||
Sbjct 245361 CATCGCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACTGCTGCCGCCATTGCCTA 245302
Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794
|| ||||| || | | || || || | || || || ||| | ||||||||
Sbjct 245301 CGGTCTTGACAAGAAGGTCGAGGGCGAGCGCAACGTCCTCATCTTCGATCTTGGTGGTGG 245242
Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854
||| || ||||| || || || || |||| ||||| || || || || || | || ||
Sbjct 245241 TACCTTCGATGTTTCTCTCCTTACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACCGC 245182
Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914
|||||| || || | ||||| || || || || || ||||| || || || || ||
Sbjct 245181 TGGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTCGTAAA 245122
Query 349915 AGAATTTAAGCG 349926
||||| |||||
Sbjct 245121 CGAATTCAAGCG 245110
Score = 120 bits (132), Expect = 9e-22
Identities = 193/276 (70%), Gaps = 6/276 (2%)
Strand=Plus/Minus
Query 378201 ATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGC 378260
|||||| | || |||| | |||||| |||||||| |||| ||| || |||||
Sbjct 524895 ATCTTCCAGAGCCTTAACCAATCGTCGCTGGATATAACCTGTTTCGGCAGTCTTGACTGC 524836
Query 378261 AGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAG 378320
||||||||| | ||| | |||||| |||| || |||||||| ||||| ||||||| ||
Sbjct 524835 AGTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAAAATTCGCTAGGAGTGAG 524776
Query 378321 TCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGT 378380
|||| | | || |||| | || || | || | || || | ||| | || ||
Sbjct 524775 ACCACGGAGGTAAGAGTTCTCGACGAAGCCACGGGCCTCAGGTGAGTAATCGTCCTTGGT 524716
Query 378381 ATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTG 378440
| ||||||||||| |||| || || ||| | ||||| || || || || ||| | ||
Sbjct 524715 GAAGTGAGGTAATGTGCGATACTTGAAACCAAAAGGAATACGCTTGCCTTCGACAATTTG 524656
Query 378441 TTGAC---CAAGTGCAGAAACCATTTGAGCAATATT 378473
|||| |||| |||| |||||||| ||||||
Sbjct 524655 CTGACCGACAAGCGCAG---TCATTTGAGAAATATT 524623
Score = 113 bits (124), Expect = 1e-19
Identities = 105/133 (79%), Gaps = 3/133 (2%)
Strand=Plus/Minus
Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517
|||||||||||| | ||||| ||| || || | |||||||| || ||||| || ||
Sbjct 525656 CGTGGCACACCAAGAGTAACGTTC---TTGGACGAGACACCAGCGAAATGGAAGGTGTTC 525600
Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577
|| || | ||||||| ||||||||||| |||||||| || | ||| |||||||||||
Sbjct 525599 AGTGTCATCTGAGTAGCAGGCTCACCAATAGACTGCGCAGCCAGAACACCAACCATTTCA 525540
Query 377578 CCAGGATTGACAA 377590
||||| |||||||
Sbjct 525539 CCAGGGTTGACAA 525527
>seq601
Length=675774
Score = 111 bits (122), Expect = 5e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || || || || || ||||| || || || || || ||
Sbjct 347707 CATACCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 347766
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
| | || || ||||| || || || || ||||||||||| || || ||||| |||||
Sbjct 347767 ACTCAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGTCGCTGCTGGTCAGG 347826
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|| || || || || ||||| || || | || || || || || | || || | ||
Sbjct 347827 GGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTC 347886
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || | ||||| || || || || || || |||||||||||
Sbjct 347887 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 347937
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515206757560562
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |