Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233895.1_
202017-07-27] 2,454 sequences; 53,227,347 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq225 219 5e-52
>seq225
Length=1102471
Score = 219 bits (242), Expect = 5e-52
Identities = 519/775 (67%), Gaps = 22/775 (3%)
Strand=Plus/Plus
Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239
|||||| | | ||||||| || | | ||||| ||||| || | ||| |||
Sbjct 390132 CCTCAGCACATGATCATGCGTGTGTCTGTTGGTATTTGGGGTGATGATATCGAGCGAGTC 390191
Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299
||||| ||| || | ||| | || | ||| || || ||| | || || || |||
Sbjct 390192 TTGGAGACATACAACCTGATGTCCAGCAAATTCTTCACACATGCCTCTCCCACGCTCTTC 390251
Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359
||||| || || ||| || || |||| |||||| |||| | |||||||| |||
Sbjct 390252 AACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGACGAC 390311
Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419
|| || || |||||||| || |||||| |||||| ||||||||| | | |||
Sbjct 390312 AGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGT 390371
Query 53420 GGTATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477
||||| || | || ||| | | | ||||||| | ||| | || || || |
Sbjct 390372 GGTATTGGCCTGAACGTGCACCGTA--TCCGTGCTACTGGCTCCTACATTGCCGGTACCA 390429
Query 53478 ACGG--CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTA 53535
|||| | ||| | || | || |||||||| || |||||||||||||| || || ||
Sbjct 390430 ACGGTACATCGA--ACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCTA 390487
Query 53536 CGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCA 53595
||| |||||||||| ||||| || | || ||||||||||||||||| |||||
Sbjct 390488 TGTCGACCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCA 390547
Query 53596 CGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTG 53655
| | || | | ||||| || || || ||| ||| || ||| | || ||| | ||
Sbjct 390548 CTCTGATGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCCGTGC 390607
Query 53656 CCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715
||||||||| || || || ||||| || || || |||||| | || || ||| |
Sbjct 390608 CCGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAA 390667
Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTG 53774
|| || ||| ||||||||||| ||||||||||| |||||| | | ||| ||||| |
Sbjct 390668 CGGCGACTGGACGCTGATGTGCCCTAACGAGTGCCCTGGCCTCGCCGACTGT-TACGGAG 390726
Query 53775 AGGAGTTTAACGAGATGTATCGGACGTAC-----GCAGTTC-AGGGCCGCTACAAGAAGA 53828
||||||| | | |||| | |||| | || | |||| ||| ||||
Sbjct 390727 AGGAGTTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGC------AAGA 390780
Query 53829 AGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGC 53888
||||||| | | | ||| | || || || || |||| ||||| |||| |
Sbjct 390781 CTATCAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAACC 390840
Query 53889 CGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943
| | |||| |||||||||| | |||| ||||||||||| |||||| ||||
Sbjct 390841 CATTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGG 390895
Score = 91.5 bits (100), Expect = 2e-13
Identities = 549/861 (64%), Gaps = 54/861 (6%)
Strand=Plus/Plus
Query 55096 TGACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCAT 55155
|||||| | ||| | ||| | || | | ||||| | ||| ||||||||| | ||||
Sbjct 391019 TGACTTCAAGAAGTTGCACAAGGTCAGTCAGGTTGTTATTCGCAACCTGAACAAGATCAT 391078
Query 55156 CGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCAT 55215
||| ||| ||||||| | | ||| ||||| ||| | || ||||| |||||
Sbjct 391079 CGATGTGAACCACTACCCTGTCCAGGAGGCTCGCAACAGTAACATGCGCCACCGACCCAT 391138
Query 55216 CGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGAT--TGCCCTTCGAC 55273
| | ||||| |||||| | ||||| ||| | ||||| | ||||||||||
Sbjct 391139 TGGTCTTGGTGTTCAGGGCCTTGCCGATGCTTTCCT--TGCTCTGCGCATGCCCTTCGAG 391196
Query 55274 TCGGAACCT--GCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCG 55330
|| | || ||||| || | ||| || | |||||| || | ||| ||| || ||
Sbjct 391197 TC--ACCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGAC-CATTTACCACGCTGCC 391253
Query 55331 CTCGAGGAGTC-GTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTC 55389
||| | || ||| || ||||||| | ||||| ||||| || ||| | |||
Sbjct 391254 CTCACTGCCTCCGTG-CAGCTGGCTAAGGAGGAGGGTCCCTACTCCACCTTCAAAGGTTC 391312
Query 55390 GCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGG---GGCAAG---TCTGACCCCAT 55443
|| || |||| | ||||||||||| | ||| | |||| ||||||| |
Sbjct 391313 CCCCGCCTCTGAGGGTATCCTCCAGTTCGACATGTGGAACGTCAAGCCCTCTGACCTCTG 391372
Query 55444 G---TTTGACA-------AGTTGAAG-CATGACATTCACTTGTGGGGCCTACGCAACTCC 55492
| | || | || |||| || |||| ||| ||| | || |||
Sbjct 391373 GGACTGGGAGACTCTTCGAGAGGAAGTCAAGACA--CAC------GGCATCCGTAACAGT 391424
Query 55493 CTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCG 55552
|||||| | || || ||||| || || || | ||||| ||||||||||||||
Sbjct 391425 CTGCTCCTTGCTCCTATGCCTACTGCCAGTACCTCCCAGATTCTGGGCAACAACGAGTGC 391484
Query 55553 TTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATG 55612
|||||||| ||||| |||||||||||| || || || || |||||||| |
Sbjct 391485 TTCGAGCCCTACACCTCCAACATCTACCAACGACGTGTTCTCGCTGGTGAGTTCCAGGTT 391544
Query 55613 ATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG--ATCA 55670
||||| || |||||||||| | || |||| ||| | || |
Sbjct 391545 GTCAACCCCTGGCTGCTCAAGGACCTTGTCGACATGGGTCTGTGGT--CCGATGCTATGA 391602
Query 55671 AGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA---TCTGGAGATTCCTCTGC 55724
||| || || |||| ||| || ||| | ||||| || | || |||
Sbjct 391603 AGAACCGCATCATTGCTGAGAATGGT---TCCATTCAGAACATTCCCAACATCCCTGCCG 391659
Query 55725 GTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAG--AGTCTGATTGACAT 55782
| |||||| | || ||| || |||||||| | ||| |||| || | ||
Sbjct 391660 ATGTCAAGGCTCTGTATAAGACCGTTTGGGAGATCTCTCAGCGCCAAGTCG--TTCAGAT 391717
Query 55783 GAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAA 55842
| ||||||||| ||||| | ||| || ||||||||||| ||||||||| |||| | |
Sbjct 391718 GGCTGCTGATCGAGGTGCCTTCATTGATCAGTCCCAGTCACTGAACATCCACATGAAAGA 391777
Query 55843 TCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGAC 55902
|| || ||| |||| | | | ||||||||| || |||||| || || |||||
Sbjct 391778 CCCCACAATGGGCAAGATCACCAGTATGCACTTTGCAGGCTGGAAGCTTGGCCTTAAGAC 391837
Query 55903 GGGTATGTACTATCTGCGGAC 55923
|| |||||||| || || ||
Sbjct 391838 TGGCATGTACTACCTTCGTAC 391858
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547199214149200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |