Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233895.1_ 202017-07-27] 2,454 sequences; 53,227,347 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq225 219 5e-52 >seq225 Length=1102471 Score = 219 bits (242), Expect = 5e-52 Identities = 519/775 (67%), Gaps = 22/775 (3%) Strand=Plus/Plus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 |||||| | | ||||||| || | | ||||| ||||| || | ||| ||| Sbjct 390132 CCTCAGCACATGATCATGCGTGTGTCTGTTGGTATTTGGGGTGATGATATCGAGCGAGTC 390191 Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299 ||||| ||| || | ||| | || | ||| || || ||| | || || || ||| Sbjct 390192 TTGGAGACATACAACCTGATGTCCAGCAAATTCTTCACACATGCCTCTCCCACGCTCTTC 390251 Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359 ||||| || || ||| || || |||| |||||| |||| | |||||||| ||| Sbjct 390252 AACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGATATGAAGGACGAC 390311 Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419 || || || |||||||| || |||||| |||||| ||||||||| | | ||| Sbjct 390312 AGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCCAAGATGGCTGGT 390371 Query 53420 GGTATCGGTATCCAC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477 ||||| || | || ||| | | | ||||||| | ||| | || || || | Sbjct 390372 GGTATTGGCCTGAACGTGCACCGTA--TCCGTGCTACTGGCTCCTACATTGCCGGTACCA 390429 Query 53478 ACGG--CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTA 53535 |||| | ||| | || | || |||||||| || |||||||||||||| || || || Sbjct 390430 ACGGTACATCGA--ACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACTGCTCGCTA 390487 Query 53536 CGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCA 53595 ||| |||||||||| ||||| || | || ||||||||||||||||| ||||| Sbjct 390488 TGTCGACCAGGGTGGCAACAAGCGACCCGGTGCTTTTGCCATCTACCTCGAGCCTTGGCA 390547 Query 53596 CGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTG 53655 | | || | | ||||| || || || ||| ||| || ||| | || ||| | || Sbjct 390548 CTCTGATGTCTTCGAGTTCCTTGATCTCCGTAAGAACCACGGTAAAGAGGAGGTCCGTGC 390607 Query 53656 CCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715 ||||||||| || || || ||||| || || || |||||| | || || ||| | Sbjct 390608 CCGTGACCTTTTCCTCGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAA 390667 Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTG 53774 || || ||| ||||||||||| ||||||||||| |||||| | | ||| ||||| | Sbjct 390668 CGGCGACTGGACGCTGATGTGCCCTAACGAGTGCCCTGGCCTCGCCGACTGT-TACGGAG 390726 Query 53775 AGGAGTTTAACGAGATGTATCGGACGTAC-----GCAGTTC-AGGGCCGCTACAAGAAGA 53828 ||||||| | | |||| | |||| | || | |||| ||| |||| Sbjct 390727 AGGAGTTCGAGGCTCTGTACGAAAAGTACGAGAAGGAGGGCAAGGGTCGC------AAGA 390780 Query 53829 AGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGC 53888 ||||||| | | | ||| | || || || || |||| ||||| |||| | Sbjct 390781 CTATCAAGGCTCAGAAACTTTGGTACGCCATTCTTGAGGCCCAGACTGAGACCGGAAACC 390840 Query 53889 CGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 | | |||| |||||||||| | |||| ||||||||||| |||||| |||| Sbjct 390841 CATTCATGCTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGG 390895 Score = 91.5 bits (100), Expect = 2e-13 Identities = 549/861 (64%), Gaps = 54/861 (6%) Strand=Plus/Plus Query 55096 TGACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCAT 55155 |||||| | ||| | ||| | || | | ||||| | ||| ||||||||| | |||| Sbjct 391019 TGACTTCAAGAAGTTGCACAAGGTCAGTCAGGTTGTTATTCGCAACCTGAACAAGATCAT 391078 Query 55156 CGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCAT 55215 ||| ||| ||||||| | | ||| ||||| ||| | || ||||| ||||| Sbjct 391079 CGATGTGAACCACTACCCTGTCCAGGAGGCTCGCAACAGTAACATGCGCCACCGACCCAT 391138 Query 55216 CGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGAT--TGCCCTTCGAC 55273 | | ||||| |||||| | ||||| ||| | ||||| | |||||||||| Sbjct 391139 TGGTCTTGGTGTTCAGGGCCTTGCCGATGCTTTCCT--TGCTCTGCGCATGCCCTTCGAG 391196 Query 55274 TCGGAACCT--GCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCG 55330 || | || ||||| || | ||| || | |||||| || | ||| ||| || || Sbjct 391197 TC--ACCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGAC-CATTTACCACGCTGCC 391253 Query 55331 CTCGAGGAGTC-GTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTC 55389 ||| | || ||| || ||||||| | ||||| ||||| || ||| | ||| Sbjct 391254 CTCACTGCCTCCGTG-CAGCTGGCTAAGGAGGAGGGTCCCTACTCCACCTTCAAAGGTTC 391312 Query 55390 GCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGG---GGCAAG---TCTGACCCCAT 55443 || || |||| | ||||||||||| | ||| | |||| ||||||| | Sbjct 391313 CCCCGCCTCTGAGGGTATCCTCCAGTTCGACATGTGGAACGTCAAGCCCTCTGACCTCTG 391372 Query 55444 G---TTTGACA-------AGTTGAAG-CATGACATTCACTTGTGGGGCCTACGCAACTCC 55492 | | || | || |||| || |||| ||| ||| | || ||| Sbjct 391373 GGACTGGGAGACTCTTCGAGAGGAAGTCAAGACA--CAC------GGCATCCGTAACAGT 391424 Query 55493 CTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCG 55552 |||||| | || || ||||| || || || | ||||| |||||||||||||| Sbjct 391425 CTGCTCCTTGCTCCTATGCCTACTGCCAGTACCTCCCAGATTCTGGGCAACAACGAGTGC 391484 Query 55553 TTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATG 55612 |||||||| ||||| |||||||||||| || || || || |||||||| | Sbjct 391485 TTCGAGCCCTACACCTCCAACATCTACCAACGACGTGTTCTCGCTGGTGAGTTCCAGGTT 391544 Query 55613 ATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG--ATCA 55670 ||||| || |||||||||| | || |||| ||| | || | Sbjct 391545 GTCAACCCCTGGCTGCTCAAGGACCTTGTCGACATGGGTCTGTGGT--CCGATGCTATGA 391602 Query 55671 AGA--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA---TCTGGAGATTCCTCTGC 55724 ||| || || |||| ||| || ||| | ||||| || | || ||| Sbjct 391603 AGAACCGCATCATTGCTGAGAATGGT---TCCATTCAGAACATTCCCAACATCCCTGCCG 391659 Query 55725 GTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAG--AGTCTGATTGACAT 55782 | |||||| | || ||| || |||||||| | ||| |||| || | || Sbjct 391660 ATGTCAAGGCTCTGTATAAGACCGTTTGGGAGATCTCTCAGCGCCAAGTCG--TTCAGAT 391717 Query 55783 GAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAA 55842 | ||||||||| ||||| | ||| || ||||||||||| ||||||||| |||| | | Sbjct 391718 GGCTGCTGATCGAGGTGCCTTCATTGATCAGTCCCAGTCACTGAACATCCACATGAAAGA 391777 Query 55843 TCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGAC 55902 || || ||| |||| | | | ||||||||| || |||||| || || ||||| Sbjct 391778 CCCCACAATGGGCAAGATCACCAGTATGCACTTTGCAGGCTGGAAGCTTGGCCTTAAGAC 391837 Query 55903 GGGTATGTACTATCTGCGGAC 55923 || |||||||| || || || Sbjct 391838 TGGCATGTACTACCTTCGTAC 391858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547199214149200