Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233895.1_
202017-07-27] 2,454 sequences; 53,227,347 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq225 302 5e-77
seq545 176 5e-39
seq601 152 6e-32
seq534 123 3e-23
seq2256 118 1e-21
>seq225
Length=1102471
Score = 302 bits (334), Expect = 5e-77
Identities = 1145/1766 (65%), Gaps = 67/1766 (4%)
Strand=Plus/Minus
Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091
||| | || || || ||||||||||| ||||| ||||| ||||||||| | ||||
Sbjct 391864 GCCTGTGTACGAAGGTAGTACATGCCAGTCTTAAGGCCAAGCTTCCAGCCTGCAAAGTGC 391805
Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151
||| ||| ||| | | |||||||| | |||| ||||||||| ||||| ||||||
Sbjct 391804 ATACTGGTGATCTTGCCCATTGTGGGGTCTTTCATGTGGATGTTCAGTGACTGGGACTGA 391745
Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAA-TTGACTTTTGTGGAATTTCCCA 80210
||||| || || ||||| || ||||| | || | ||| | | | | || |||||
Sbjct 391744 TCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGACTTGGCGCT-GAGAGATCTCCCA 391686
Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267
|| || ||||| |||| | || | || |||| || | | | | ||
Sbjct 391685 AACGGTCTTATACAGAGCCTTGACA---TCGGCAGGGATGTTGGGAATGTTCTGAATGGA 391629
Query 80268 ACCGTCCTTTACAATTT---GATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324
||| | || |||| | || |||| || | ||| | ||| | | | ||
Sbjct 391628 ACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCACAGACCCATGTCGACAAG 391569
Query 80325 ATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381
|| || | || | | ||| || | || |||| || ||||| || || |
Sbjct 391568 GTCCTTGAGCAGCCAGGGGTTGACAACCTGGA---ACTCACCAGCGAGAACACGTCGTTG 391512
Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441
|| | ||| | ||||| ||||| || ||||||||| || || ||||| | || ||
Sbjct 391511 GTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACT 391452
Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501
|| || ||||| || | | | ||| || || | |||||| |||||| |||||
Sbjct 391451 GGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTCCTC 391392
Query 80502 GCGCAAA---TCTGA---CCAAAAATCAACCCCAACGCTGTGACC--CCACATGTCGTGC 80553
|| | | || | ||| | ||| | ||| |||| |||||||||| |
Sbjct 391391 TCGAAGAGTCTCCCAGTCCCAGAGGTCAG----AGGGCT-TGACGTTCCACATGTCGAAC 391337
Query 80554 TGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTG 80613
|| | ||| ||||| || || || || || ||| || ||| || |||||| |||
Sbjct 391336 TGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTGGAGTAGGGACCCTCCTCCTTA 391277
Query 80614 GCCAGCTCACACGACTCCA-TAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTT 80672
||||||| |||| || | ||||| ||||| |||||| ||| |||| ||||||
Sbjct 391276 GCCAGCTG-CACGGAGGCAGTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTT 391218
Query 80673 CACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAG 80732
| | || |||| || ||||| | || || || | ||| | || || ||
Sbjct 391217 GAGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGGCAAG 391158
Query 80733 GCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAA 80791
||||||||| || | | || || ||||||||| |||| | | || | ||||| | |
Sbjct 391157 GCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAG-CCTCCTGGA 391099
Query 80792 TTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACAT 80851
||||| ||| |||||||| |||||||||||| |||||||| | | || |
Sbjct 391098 CAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGACCT 391039
Query 80852 CATGAAGTTTCTGAAAGTCGAATT--GGTTCCCC----TTCACAAATGCCGGAAGGCTCA 80905
|| | |||| ||||| | | || | || | || | || || ||
Sbjct 391038 TGTGCAACTTCTTGAAGTCATAGCAAGCCTCATCGTAGTTGATGAAAGAGGGCAGAGCCA 390979
Query 80906 GGGACGCCAGATTGCACACGGCCACCTCTTCAG---CATCTGTAAACTCGACGATTTCCG 80962
| || || || ||||| || || ||||| |||| || | ||| ||| | ||||| |
Sbjct 390978 GAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCA-CAGTA--CTCAATAATTTCAG 390922
Query 80963 TGCACAAATTAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCA 81020
|||||| || || ||| || ||||| ||||| || ||||| |||| ||||||
Sbjct 390921 TGCACAGGTTGGAG--CTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCA 390864
Query 81021 AGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTC 81080
|| ||||||||| |||| | ||| | |||||||| ||| | || || |||||||
Sbjct 390863 GGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTA 390804
Query 81081 CCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA 81140
||||| | | ||||||| |||||| ||||| || | | ||||| ||||
Sbjct 390803 CCAAAGTTTCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTA 390744
Query 81141 AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACAT 81200
| ||||||| | |||| | || | |||| | ||||||||||||||||||||
Sbjct 390743 CAGAGCCTCGAACTCCTCTCCGTAACAGTCGGCGAGGCCAGGGCACTCGTTAGGGCACAT 390684
Query 81201 CAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGC 81260
||| ||||||| || || || ||| |||||||||| ||||||||||| |||||
Sbjct 390683 CAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGC 390624
Query 81261 GGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAA 81320
| ||| ||||| ||| || ||||||| | ||| ||||| || | || || ||
Sbjct 390623 GAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAAGGAA 390564
Query 81321 GTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGCG 81374
|| | || || | ||||| ||||| || || | ||| | | || | ||||
Sbjct 390563 CTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTG-- 390506
Query 81375 ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGAT 81434
||||||||||| ||| || || ||||| ||| || ||||| | |||||| | |
Sbjct 390505 -TTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAAC 390447
Query 81435 ACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCTG 81492
||| | || |||||| ||||| | || || || | || || || |||
Sbjct 390446 ACCGTTCGATGTACCGTTGGTACCGGCAATGTAGGAGCCAGTAGCACGGATACGGTGCAC 390387
Query 81493 ATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCA 81552
|| || || || ||||| | | ||| || ||| ||||| || | || ||
Sbjct 390386 GTT--CAGGCCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCG 390329
Query 81553 TAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGG 81612
|| |||||||| || || || | ||||| |||| |||||| || ||||| || |||
Sbjct 390328 TAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTG-GGG 390270
Query 81613 CT-TTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACAT 81671
|| | |||||| ||||| || || || | || || |||| | | | |||||
Sbjct 390269 CTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGGACAT 390210
Query 81672 CAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACG 81731
||||| || || ||| ||| || ||||| ||||| |||||| | || |||||
Sbjct 390209 CAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAATACCAACAGACACACG 390150
Query 81732 CATAAACATGTACTG-GGGCGTCTCG 81756
||| | ||||| ||| ||||| ||||
Sbjct 390149 CATGATCATGTGCTGAGGGCG-CTCG 390125
>seq545
Length=357985
Score = 176 bits (194), Expect = 5e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| || || || ||||| |||||||| || || ||||||
Sbjct 100445 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 100386
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| ||||| || || |||||||||||||| |||||||| || ||
Sbjct 100385 GATACCATTGATAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAA 100326
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || || ||||| |||||||| ||||||| || || || | ||||| ||
Sbjct 100325 CAGCGACTTATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACAAC 100266
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || |||||||| ||||| || | || | |||||||| |||||
Sbjct 100265 ATTCAGAAGGAATCTACTCTCCACTTGGTTCTCCGTCTTCGTGGTGG 100219
Score = 176 bits (194), Expect = 5e-39
Identities = 168/215 (78%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| || || |||||||| || ||||||||||| ||||| |||| ||| |
Sbjct 100661 GTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGATACCATCGAC 100602
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
||| | ||| | || |||||||| |||||||| || ||||| ||||||||||| || ||
Sbjct 100601 AATGTTAAGTCAAAGATTCAGGATAAGGAGGGTATCCCTCCTGACCAGCAGCGCCTGATC 100542
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597
|||||||| ||||||||||| || | || ||||| || ||||| || | || ||||||
Sbjct 100541 TTTGCTGGAAAGCAACTCGAAGACGGCCGAACCCTTGCCGACTACAACATTCAGAAGGAA 100482
Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || |||||||| ||| | || || || |||||
Sbjct 100481 TCTACCCTTCATCTCGTCCTCCGCCTCCGTGGTGG 100447
Score = 170 bits (188), Expect = 2e-37
Identities = 178/231 (77%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || ||||| ||||| || ||||| ||||| || || |||||||| ||||| ||
Sbjct 100217 ATGCAGATTTTTGTGAAGACTCTCACCGGAAAGACCATCACCCTTGAGGTCGAGTCCAGT 100158
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | || ||||| || ||||||||||||||||| ||||| || || |||
Sbjct 100157 GACACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAG 100098
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
|||||||| || || ||||||||||| | || |||| ||| ||| | ||| ||||| ||
Sbjct 100097 CAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGC-GACTACAA 100039
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| ||||| || |||||||| || || | || ||||||||||| ||
Sbjct 100038 CATCCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACTTCGCGGTGGCCA 99988
Score = 140 bits (154), Expect = 4e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||| ||||| |||||||| | ||||||||||| || || || |||||||||||
Sbjct 100958 ATCATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCT 100899
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | || | ||| | ||| | || ||||||||||||||||| ||||| || |||
Sbjct 100898 TCCGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCTGAC 100839
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582
||||| || | ||||| || || ||||| || ||||| | || || || | || ||
Sbjct 100838 CAGCAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTAC 100779
Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| | || ||||| || |||||||| || || | || || || |||||
Sbjct 100778 AACATTCAGAAGGAGTCTACTCTTCACCTTGTTCTCCGCCTCCGTGGTGG 100729
>seq601
Length=675774
Score = 152 bits (168), Expect = 6e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || || ||||| || || |||||||| |||||
Sbjct 347937 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 347878
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | ||| | || || |||||||||||||| || || || ||||||
Sbjct 347877 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 347818
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| || || |||||||| ||||| |||||||||| || ||||| ||||| ||
Sbjct 347817 CAGCGACTTATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGTGACTACAAC 347758
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| ||||| || || || ||| | || || || |||||
Sbjct 347757 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTCCGTGGTGG 347711
>seq534
Length=1254335
Score = 123 bits (136), Expect = 3e-23
Identities = 136/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474
|| || ||||| || || |||||||| || || || ||||| ||||| || | |||
Sbjct 1114686 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 1114745
Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534
| ||| | ||| | || || |||||||||||||| ||||| || ||||| ||||| ||
Sbjct 1114746 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 1114805
Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594
|| || ||||||||||| |||||||||| || || || | ||||| || |||| |||
Sbjct 1114806 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 1114865
Query 27595 G 27595
|
Sbjct 1114866 G 1114866
>seq2256
Length=1610869
Score = 118 bits (130), Expect = 1e-21
Identities = 150/206 (73%), Gaps = 3/206 (1%)
Strand=Plus/Minus
Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGAT---GAATCGTGGGTCGTCGTTTGGTCAGCGT 64719
|| ||||| || ||||||||||| ||||| | || | || || |||| ||||||
Sbjct 1497518 AAGAAGGCCGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGT 1497459
Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779
|||| ||||| || ||| || || || ||||| ||| | ||| ||||| |||
Sbjct 1497458 CTCGTTGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTC 1497399
Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839
||||| || ||||| || || ||||| |||||| | || || |||||||| ||||||||
Sbjct 1497398 TGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGT 1497339
Query 64840 GACGAGGGGCTCCACCAAGAATTTGC 64865
|| ||||| || ||| || |||||
Sbjct 1497338 GATGAGGGTCTTCACACTGACTTTGC 1497313
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570292905728480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |