Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233915.1_
202017-07-27] 2,859 sequences; 56,328,106 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq2129 111 1e-19
seq2339 104 2e-17
seq2368 89.7 4e-13
>seq2129
Length=568468
Score = 111 bits (122), Expect = 1e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || ||| ||||||||| |||||||||||| |||| ||| | || ||
Sbjct 361285 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCG 361344
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || || | ||||| ||||| || || | ||||||||||||
Sbjct 361345 AGCTGCTTGCCAGCAAAGATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 361404
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| | ||||||||| | ||| ||||||||
Sbjct 361405 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTC 361464
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343
||||| || ||||| || || || ||||| ||||||
Sbjct 361465 CCCGTGAGGGTCTTGACGAAAATCTGCATCTTGCCT 361500
>seq2339
Length=1374216
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||| |||||||||||| ||| |||| | || |||| || || || |||||
Sbjct 541985 CTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCTTCCAACTGCTTACCAGCGAA 542044
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
|| | ||||| || || || || | ||||||||||||| ||| || ||| ||
Sbjct 542045 GATAAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTT 542104
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | |||| | ||| ||||| | ||| || ||||| || || |||||||||||
Sbjct 542105 GTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTCTTTCCAGTGAGAGTCTTCAC 542164
Query 45325 AAAGATTTGCAT 45336
|||||| |||||
Sbjct 542165 AAAGATCTGCAT 542176
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||||||||||||||||||||| || || | || ||
Sbjct 542196 ACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCA 542255
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
||||| || || ||||| || | |||||||| |||||||| | |||||||||||||
Sbjct 542256 AGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCCTGG 542315
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | || ||| || |||| ||||| |||||
Sbjct 542316 ATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTTT 542375
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || || ||||| || |||||||||||
Sbjct 542376 CCAGTGAGGGTCTTGACGAAGATTTGCAT 542404
Score = 96.9 bits (106), Expect = 3e-15
Identities = 139/196 (71%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
|||||||||||||||||| || || ||| |||| || || || || ||||||||
Sbjct 542723 CTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAA 542782
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
||||| || || ||||| || || | |||||||||||| ||| || ||| ||
Sbjct 542783 AATCAAGCGTTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATT 542842
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | |||| | ||| ||||| | ||| || |||||||| |||| ||||| ||
Sbjct 542843 GTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGAC 542902
Query 45325 AAAGATTTGCATGTTG 45340
||||| |||||| ||
Sbjct 542903 GAAGATCTGCATGATG 542918
Score = 93.3 bits (102), Expect = 3e-14
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205
||||||||||||||||||||| || || |||| || ||||| ||||| || ||
Sbjct 542442 TCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCTTCGAGTTGCTTTCCAGCAAAG 542501
Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265
|||| ||||| ||||| ||||| | ||||||||||||| ||| ||| ||||||
Sbjct 542502 ATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTTGACTTAACATTG 542561
Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | | | || ||| ||||| | || || |||||||| || || ||||| ||
Sbjct 542562 TCGATGGTATCGGACGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 542620
>seq2368
Length=236445
Score = 89.7 bits (98), Expect = 4e-13
Identities = 131/184 (71%), Gaps = 6/184 (3%)
Strand=Plus/Plus
Query 45147 CCTTCTGAATGTTGTAGTCGTTCAG---TTGGCGATCGTCGTCCAGTTGTTTTCCGGCGA 45203
||||||| |||||||||||| || | ||| ||| ||| || || || || ||||
Sbjct 97260 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCG---AGCTGCTTACCAGCGA 97316
Query 45204 ATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCG 45263
| |||| ||||||||||| || || | |||||||||||| || || ||| ||
Sbjct 97317 AGATCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACAT 97376
Query 45264 CCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323
| | | ||||| ||| ||||| | ||| || |||||||||||||| |||||||
Sbjct 97377 TGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCA 97436
Query 45324 CAAA 45327
| ||
Sbjct 97437 CGAA 97440
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395061433975039
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |