Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233915.1_ 202017-07-27] 2,859 sequences; 56,328,106 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1712 143 5e-29 seq2317 109 1e-18 seq225 107 4e-18 seq2661 105 1e-17 >seq1712 Length=1031001 Score = 143 bits (158), Expect = 5e-29 Identities = 387/586 (66%), Gaps = 17/586 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| ||| Sbjct 111826 TCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 111767 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||| | |||||| || || | || || || || || ||||| | Sbjct 111766 GCCTTGTAAACCTTCTCGTTGCCAAGCGCGACAAGGAGACGATCAGCGACGAACTCAATG 111707 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || |||||||||||||| | | ||| |||| |||||| || | Sbjct 111706 TACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGGGCACAGGGAAGAGCCTCAGTGAGG 111647 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG--TGCCAG-- 251795 || |||| || ||| || || || | || ||| ||| ||| ||| | Sbjct 111646 AACTCCTGCTCAATGGTGACGGCATCAGTAATGATATCCTGGATCATCTGCTTGCTGGCA 111587 Query 251796 AGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTC 251855 ||| |||| || | |||| ||||| | |||| | ||| |||||||| Sbjct 111586 CGAC-CCTTG------AGGTGAGAGTGGAGGAGGCAGGCAAAGTCAGTGTGAAGACCCTC 111534 Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 || ||| ||||| ||||||||| | ||| || ||||| | ||||| ||| |||| Sbjct 111533 ATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTGAG 111474 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAAC 251975 ||||||||| | | |||| ||| ||| | | |||||| ||| | | ||||| Sbjct 111473 CCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCGAAAGCAAC 111414 Query 251976 AAGGCGCTCAGCAAACGACTTGTCCTGCGACAAGA-ACTTCTG--TGCCCATGCTGCCTT 252032 || |||| ||||| || ||||| | || | || | ||||| | ||||| Sbjct 111413 GAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATGGCCCAGTCGGCCTT 111354 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 ||||| | |||||| || || || || | |||||| || | |||| ||| || Sbjct 111353 CTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAAGAGGTAGGTTCGCTGGGCGGGCTC 111294 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 || |||| | |||| || || ||||| |||| || |||||| Sbjct 111293 CTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGATG 111248 >seq2317 Length=1589273 Score = 109 bits (120), Expect = 1e-18 Identities = 448/697 (64%), Gaps = 11/697 (2%) Strand=Plus/Plus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174 ||| | |||||| | |||||||| ||||||||||| | | || ||| | ||| Sbjct 797782 CTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGACTTGGCGCTGAGA 797841 Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234 ||||||||| ||||| |||| ||||||||||| | | | ||| || ||||| Sbjct 797842 GATCTCCCAAACGGTCTTATACAGAGCCTTGACATCGGCAGGGATGTTGGGAATGTTCTG 797901 Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGAG 293293 || || || | ||||| || |||||||||| | |||||||| || |||| | Sbjct 797902 AATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCACAGACCCATG-T 797960 Query 293294 CAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGAC 293353 | | || || || || | | ||||||||| ||||||||||||||||| || | Sbjct 797961 CGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGTC 798020 Query 293354 GGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCAG 293413 | ||| ||||| || ||| ||| ||| ||| || |||||| | | Sbjct 798021 GTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGG 798080 Query 293414 TAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACCCT---TCTTGACAC 293470 || || ||||||||| ||||| |||| ||| | | || | ||||||| Sbjct 798081 TACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACTT 798140 Query 293471 GCGATTCGAGACCCGCCCAGT-CCAGAGCAGTCTGA-GGTGTAACACCCCAGAGATGATA 293528 | | ||| | |||||| |||||| ||| || || | || ||| | | | Sbjct 798141 CCTCTCGAAGAGTCTCCCAGTCCCAGAG--GTCAGAGGGCTTGACGTTCCACATGTCGAA 798198 Query 293529 CTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCATC 293588 ||| | |||||||| ||| || || || | ||||||| | ||| || | ||| | Sbjct 798199 CTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTGGAGTAGGGACCCTCCTCCTT 798258 Query 293589 AGAGAGCTCGCA-AGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGT 293647 || |||| ||| || || | ||||| ||||||| ||||||||||| || Sbjct 798259 AGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGT 798317 Query 293648 TGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGCA 293707 |||||| ||||||| || || || ||||| ||| | ||| |||| | Sbjct 798318 TGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGGCAA 798377 Query 293708 GACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGAA 293767 | ||||| ||||| | ||||| ||| || | ||| |||| || | ||||| | | Sbjct 798378 GGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGGA 798437 Query 293768 CCGCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804 | | || ||||||| ||| || ||| |||||| Sbjct 798438 CAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTT 798474 >seq225 Length=1179983 Score = 107 bits (118), Expect = 4e-18 Identities = 159/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || ||||| ||||| || || || |||| |||||||| || ||| Sbjct 937867 GGTGAGGATCTTTGCAACTGTACCTTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAC 937926 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | |||| |||||||||| | || || ||||| ||||||||| || | Sbjct 937927 CAGACTCACCTCCGTCTCAAGCGTGGTCAGCGTTACGGTCTTTGCGGTCCCAACGGTTCC 937986 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| |||||| ||||||||||| |||| ||| | || || || ||||| ||| Sbjct 937987 GGAAAGTCCACTCTCATGCGCGCCATCAACAACGAGCAGGTTGAGGGTTTCCCTAA-GCA 938045 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCC 279566 ||||| | ||| || | || ||||||||| | |||||| Sbjct 938046 GAGCGAGGTCAAGACTGTCTTCGTCGAGCACGACCTTGACTCC 938088 Score = 102 bits (112), Expect = 2e-16 Identities = 168/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 280152 TCTATGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATC 280211 ||| || ||| || |||| ||||| || ||||| ||||| || |||||||| || ||| Sbjct 938674 TCTCTGGGCTCCCGTATTGCCGTCATCGGTCCCAACGGTGCTGGCAAGTCTACTCTGATC 938733 Query 280212 AAAGTCCTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATG 280271 || || || ||||| ||| | ||||| |||| | | |||| ||||| Sbjct 938734 AACGTGCTCACTGGTGAGCTCATCCCCACTCAGGGTGAGATCTACCAGCACGAGAACATC 938793 Query 280272 CGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACT 280331 || || || ||| | |||||||||||| |||||||| ||||| || |||| |||| Sbjct 938794 CGTATCGCCTACATTAAGCAGCACGCTTTCGCTCACATCGATAACCATCTCGACAAGACT 938853 Query 280332 CCTAACCAATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 ||| | | ||||| |||||||| | | || | ||| |||||| ||| | |||| || Sbjct 938854 CCTTCCGAGTACATCCAGTGGCGAT-TCCAGACTGGTGAGGATCGTGAGACCATGGACCG 938912 >seq2661 Length=413000 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 218580 CGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAA 218639 |||| |||||||| ||||||| ||||||||| || | | |||| |||||| | || Sbjct 257437 CGTGCTGGATGGCTTCAAGCCTGGTCAGCGTAAGGTCATATATGCCTGCTTCAAGAGAAA 257496 Query 218640 CCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTA 218699 |||||| |||| | ||||||| | | || |||||||||| || || ||| ||| Sbjct 257497 CCTGGTCAAAGATAAGAAGGTCGTTGAATTGGCTGGTTATGTCTCTGAGCAGACTGCCTA 257556 Query 218700 CCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGG 218759 |||||||||||| ||| ||| || | || | ||| |||| ||| ||| || || Sbjct 257557 CCATCACGGTGAACAGTCTCTCCAACAGACTATCATTGGCCTGGCCCAGAACTTCGTCGG 257616 Query 218760 CAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCT 218810 |||||||| |||| ||| |||| || | || |||||||| || Sbjct 257617 TTCAAACAACATCAACTGTCTGGAACCCAGTGGAAACTTCGGTTCTCGACT 257667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027799149374419