Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233915.1_ 202017-07-27] 2,859 sequences; 56,328,106 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1712 372 6e-98 seq2317 331 2e-85 >seq1712 Length=1031001 Score = 372 bits (412), Expect = 6e-98 Identities = 600/849 (71%), Gaps = 24/849 (3%) Strand=Plus/Plus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || ||| |||||| || ||||||||||| || ||||||| Sbjct 111012 ATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTTTCCAAGGAT 111071 Query 42369 ACGGCCGGCTGGGAGTCA-----CTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATAC 42423 | |||| | || ||| ||| | || |||| ||| || |||| | Sbjct 111072 CTCCATGACTGGAA--CAACCGCCTGACTGCCGATGAGCAGTTCTTCGTCTCTCACATCC 111129 Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 | || |||||||| || ||||| || || ||||| |||||||| | | | |||| Sbjct 111130 TTGCTTTCTTCGCTGCGTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCGATTCAGTG 111189 Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 ||||| ||| | ||||| || |||||||||||||||||||| || |||||| Sbjct 111190 GCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACA 111249 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGC 42600 | ||||| ||| ||| || ||||||| |||| |||||| ||| |||| | ||| Sbjct 111250 TCCACTCCGAGACCTACTCC---CTGCTCATTGACACCTACATCAAGGAGCCCGCCCAGC 111306 Query 42601 GTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGG 42660 | | | || || || ||||| ||||| || ||||||||| |||||||| ||||||| Sbjct 111307 GAACCTACCTCTTTAACGCCATTGAGACCATCCCCTGCATCCGAAAGAAGGCCGACTGGG 111366 Query 42661 CGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720 | || |||||| || | ||| | | || | | || | || || || || | | Sbjct 111367 CCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCTTTCGCTG 111426 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAG 42779 | || ||||| ||||||||| || ||||||||||| ||||||||||||||| || | Sbjct 111427 CTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTG 111486 Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839 || || |||||||| || |||||||| ||||| |||||| | || ||||| || || Sbjct 111487 GTCTC-ATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCAC 111545 Query 42840 AGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC-AGGCACAAGCCCTCGAAGGAGCG 42898 | ||||||||||||||||| ||| |||||| ||| | ||| | ||| || Sbjct 111546 ACTGACTTTGCCTGCCTCCTCCACTC---TCACCTCAAGGGTCGTGCCAGC-AAGCAGAT 111601 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 | ||| || ||||| || || ||||| || ||| ||||||||||||| || | || Sbjct 111602 GATCCAGGATATCATTACTGATGCCGTCACCATTGAGCAGGAGTTCCTCACTGAGGCTCT 111661 Query 42959 GCCC-GTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCG 43017 ||| ||| |||| ||||||||||| ||||||||| ||||||| ||| ||||| Sbjct 111662 TCCCTGTG-CCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCG 111720 Query 43018 CCGACCATCTCC-TGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTC 43076 | || | ||||| ||| | ||| || | | ||||| | | ||||||| Sbjct 111721 CTGATCGTCTCCTTGTCGCGCTTGGCAACGAGAAG-GTTTACAAGGCCACCAACCCCTTC 111779 Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136 ||||| |||||||||||||| | | |||||||||||||| ||||||||||| || ||| Sbjct 111780 GACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCC 111839 Query 43137 GACTACCAG 43145 ||||||||| Sbjct 111840 GACTACCAG 111848 >seq2317 Length=1589273 Score = 331 bits (366), Expect = 2e-85 Identities = 897/1358 (66%), Gaps = 41/1358 (3%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || || || || ||||||| |||| | || || Sbjct 797986 GTTGACAACCTGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGG 798045 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| || ||| |||||||||| ||||| | || || ||||| ||||| || | | Sbjct 798046 CTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAG 798105 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGA-TGCGGAGTCTGAGCTCGTTCCAGTCCC 244268 ||||||||||| | | |||||| ||| || | | || |||| |||| | Sbjct 798106 GAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTC-----CT---CTCGAAG-AGTCTC 798156 Query 244269 ACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC 244328 || ||| ||||||| | | |||| | ||||||||| ||||| || | |||| Sbjct 798157 CCAGTCCC-AGAGGTCAGAGGGCTTGACGTTCCACATGTCGAACTGGAGGATACCCTCAG 798215 Query 244329 TGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTC 244387 | ||||| || | | |||| | ||||||||| || || ||||||| || | Sbjct 798216 AGGCGGGGGAACCTTTGAAGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAGG 798275 Query 244388 TCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTG 244447 || |||||| |||| ||| ||||||||||||||| |||||| | || || |||| | Sbjct 798276 CAGT-GAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCG 798334 Query 244448 CCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATG 244507 | |||||| |||| || | ||| | ||||| || ||||| || || | Sbjct 798335 GGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGGCAAGGCCCTGAACACCAAGA 798394 Query 244508 CCGATGGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566 || ||||||| ||| ||| |||| | || | || | || || ||||| ||| | Sbjct 798395 CCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGG-ACAGGGTAGTGGTTCAC 798453 Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGAC-GACGTCGGCCAGCAGCTGAA 244625 ||||| | |||||| |||||||| | | || | ||| ||| | | || | || | Sbjct 798454 ATCGATGATCTTGTTCAGGTTGCGAATAA-CAACCTGACTGACCTTGTGCAACTTCTTGA 798512 Query 244626 AGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGC 244685 ||||||| | | |||| || | |||| || | || || | Sbjct 798513 AGTCGTA------GCAAGCCTCATCGTAGTTGATG------AAAGAGGGCAGAGCCAGAG 798560 Query 244686 TGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGA 244745 ||| ||||||||||| || ||||| || | | ||||| | ||| || ||||| | Sbjct 798561 AGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTCAGTGCACA 798620 Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCT 244805 |||| || |||||| || |||| || || ||| |||| ||||||||| |||| Sbjct 798621 GGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCT 798680 Query 244806 TGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGT 244865 ||||||||||||| || |||||||| |||||| | || | | || ||| || | Sbjct 798681 TGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGTT 798740 Query 244866 CCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCT 244925 | |||||||| ||| ||||| |||||||||| |||||| |||||| |||| Sbjct 798741 TCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTACAGAGCCT 798800 Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985 ||||||| || || ||| | ||||| |||||| |||||||| || ||| Sbjct 798801 CGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGCGTCC 798860 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | |||||| | | || | || |||||| || || |||||||| ||||| |||| | Sbjct 798861 AGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCGAGGAAAA 798920 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 |||| | || | ||| || || |||||| | || || | || || |||| Sbjct 798921 GGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTGCGGAGATCAAGGAACTCGAAGA 798980 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 | || |||||| ||||| | ||||| || | || ||||| ||||||||||| |||| Sbjct 798981 CATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGCCACCCT 799040 Query 245166 GGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTA 245221 |||| | | | ||||| |||||||| || || |||| || | ||||| Sbjct 799041 GGTCGA----CATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTC 799096 Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTG--AGGTTGCTGATGGACA 245279 || |||||||| || |||||||| ||| | | | | | | ||| | | || Sbjct 799097 GATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGC--ACGTTCA 799154 Query 245280 TGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGC 245339 || | || || || ||||||||| | ||| ||| |||||| || || || | Sbjct 799155 GACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTC 799214 Query 245340 CCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGC 245399 |||| || ||||| |||||| | | || ||||| || |||| ||||||| ||| Sbjct 799215 CCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGG 799274 Query 245400 TGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 ||| | |||||| || ||||| ||| || || ||| Sbjct 799275 TGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAG 799312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944305451677840