Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233915.1_
202017-07-27] 2,859 sequences; 56,328,106 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq2129 120 3e-22
seq2339 111 1e-19
seq2368 96.9 3e-15
seq1712 95.1 1e-14
>seq2129
Length=568468
Score = 120 bits (132), Expect = 3e-22
Identities = 147/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| |||| || ||||| ||| || ||||| || |||
Sbjct 361297 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCCTCGAGCTGCTTGCCA 361356
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| |||| | ||||||||| || || || ||||||||||||||| ||| || ||||
Sbjct 361357 GCAAAGATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 361416
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| |||| |||||| | | ||| || || | ||| | ||| || || || || ||
Sbjct 361417 ACGTTG-TCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGT 361475
Query 127096 TTTTACAAAAATCTGCAT 127113
|| || |||||||||||
Sbjct 361476 CTTGACGAAAATCTGCAT 361493
>seq2339
Length=1374216
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | ||| | || | || | || ||||| || || || ||||| |||| |
Sbjct 541950 CCACCGCGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTC 542009
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| ||| || | ||| || |||||| |||| | ||||||||||| || ||
Sbjct 542010 AAGGTGCGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGA 542069
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| || || ||| | |||| |||| ||||| | ||||||
Sbjct 542070 ATACCCTCCTTGTCCTGAATCTTGCTCTTCACGTTG-TCGATAGTGTCACTGGACTCGAC 542128
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | ||| | || || || || ||||| || ||||| ||||||||
Sbjct 542129 CTCAAGGGTGATGGTCTTTCCAGTGAGAGTCTTCACAAAGATCTGCAT 542176
Score = 105 bits (116), Expect = 6e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|||||||| || ||||| |||||||| | ||||| || || ||||| || ||
Sbjct 542718 GTAGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCCTCAAGCTGCTTGCCG 542777
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| | ||||| || ||||| || || || ||||||||||||||| || || ||||
Sbjct 542778 GCGAAAATCAAGCGTTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTG 542837
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| ||||| | | ||| || |||| ||| | || |||||||||| ||
Sbjct 542838 ACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTC 542897
Query 127097 TTTACAAAAATCTGCATG 127114
|| || || |||||||||
Sbjct 542898 TTGACGAAGATCTGCATG 542915
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | ||||| || || ||||| ||||| |||
Sbjct 542178 CCACCACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAA 542237
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || ||| || || || || |||||| |||| | |||||| |||||||||||
Sbjct 542238 AGAGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGA 542297
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| |||||||||||| ||| || ||| | | || | ||| || | |||||||
Sbjct 542298 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACT 542357
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | || || || || || || || || || || |||||
Sbjct 542358 TCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 542404
>seq2368
Length=236445
Score = 96.9 bits (106), Expect = 3e-15
Identities = 110/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017
||| || ||||| || |||||| |||||| |||||| || || || || |||||||||||
Sbjct 97294 ATCCTCGAGCTGCTTACCAGCGAAGATCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTT 97353
Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077
|||| ||| || ||||| | || | |||||||| |||||| |||| ||| |
Sbjct 97354 GTCCTGGATCTTGGACTTGACATTGTCAATGGTGTCCGAGGACTCGACCTCGAGGGTGAT 97413
Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
|| ||||| ||||| || || || |||
Sbjct 97414 GGTCTTGCCCGTCAGGGTCTTCACGAAA 97441
>seq1712
Length=1031001
Score = 95.1 bits (104), Expect = 1e-14
Identities = 240/362 (66%), Gaps = 15/362 (4%)
Strand=Plus/Plus
Query 47223 ATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAAC 47282
|||||||| || || || ||||||||| ||||| | || || || || ||||| ||
Sbjct 111492 ATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCACACTGAC 111551
Query 47283 TTTGCCTGTCTCTACTAC----AACACTAGAGTCGATCAA--AAGTTGGACGTGCCCACC 47336
|||||||| ||| | || | | | || |||| | | ||| | || |
Sbjct 111552 TTTGCCTGCCTCCTCCACTCTCACCTCAAGGGTCGTGCCAGCAAGCAGA---TGATC--- 111605
Query 47337 GTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTG 47396
||| || || || | || |||||| |||||||| |||||| || | ||||||||
Sbjct 111606 --CAG-GATATCATTACTGATGCCGTCACCATTGAGCAGGAGTTCCTCACTGAGGCTCTT 111662
Query 47397 CCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCC 47456
||| | | | || |||||| | || | |||| ||||||| || || |||||
Sbjct 111663 CCCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCGCT 111722
Query 47457 GACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAG 47516
|| || || || || ||| | ||| ||||| | || || || |||||
Sbjct 111723 GATCGTCTCCTTGTCGCGCTTGGCAACGAGAAGGTTTACAAGGCCACCAACCCCTTCGAC 111782
Query 47517 TTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAA 47576
|| ||| | ||||| || || | |||||||||||||| ||||||||||| || | |||
Sbjct 111783 TTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGAC 111842
Query 47577 TA 47578
||
Sbjct 111843 TA 111844
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475483806790160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |