Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233915.1_ 202017-07-27] 2,859 sequences; 56,328,106 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2317 358 1e-93 seq1712 199 7e-46 >seq2317 Length=1589273 Score = 358 bits (396), Expect = 1e-93 Identities = 1156/1767 (65%), Gaps = 102/1767 (6%) Strand=Plus/Plus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | ||| |||||||||||| || || || ||||||||||| ||||| Sbjct 797645 ACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTCTTG 797704 Query 212613 AGGCC---CTTGCCCCAGCCGTGCAT-GTGCATTGCTGTGAGTTTCTTCAGCTTAATATT 212668 ||||| ||| |||||| |||| |||||| |||| |||| | || | Sbjct 797705 AGGCCAAGCTT---CCAGCC-TGCAAAGTGCATACTGGTGA---TCTTGCCC---ATCGT 797754 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 |||| | | |||| | |||||| ||||| ||| || ||||| | | Sbjct 797755 GGGGTCCTTCATGTGG---------ATGTTCAGTGACTGGGACTGATCAATGAAGGCACC 797805 Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788 | ||||| ||||| | | || | | ||| |||| |||||| |||||||| | | Sbjct 797806 TCGATCAGCAGCCATCTGAACGACTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAG 797865 Query 212789 TTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAG 212848 | |||| || | |||| | ||| |||||||| | || || || |||| Sbjct 797866 AGCCTTGACATCGGCAGGGATGTTGGGAATGTTCTGAATGGAACC-------ATTCTCAG 797918 Query 212849 C--TGCAGGCG------CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACC 212900 | || | ||| ||| | ||| ||| || ||| || | ||| ||||| | Sbjct 797919 CAATG-ATGCGGTTCTTCATAGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGC 797977 Query 212901 AGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAA 212960 || |||||||| | |||||| ||||| | ||| || | | ||||| | ||| || Sbjct 797978 AGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAG 798037 Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||||||||||| || ||||||||| ||||||||||| | || ||||| || ||||| Sbjct 798038 GTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATA 798097 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGC---CGAAGC-TC 213076 ||||| | || |||||||| | | ||||| | | ||| | ||||| || Sbjct 798098 GGAGCAAGGAGCAGACTGTTACGGATGCCGTGT--GTCT-TGACTTCCTCTCGAAGAGTC 798154 Query 213077 TGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAA 213136 | |||||||||| | |||| | ||| |||||||||||||| ||||| | Sbjct 798155 T-CCCAGTCCCAGAGGTCAGAGGG---------CTTGACGTTCCACATGTCGAACTGGAG 798204 Query 213137 GATGCCTTTGCTCA----CGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGG 213192 ||| || |||| ||||| || | | | | ||||||||| || | |||||| | Sbjct 798205 GATACC----CTCAGAGGCGGGGGAACCTTTGAAGGTGGAGTAGGGACCCTCCTCCTTAG 798260 Query 213193 CCAGCTCGCA-GGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTG 213251 |||||| ||| ||| || |||||||||| ||| ||||| || || |||| | ||||| Sbjct 798261 CCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTTG 798319 Query 213252 AGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGC 213311 |||| ||||| || ||| ||||||||| || |||| |||| || || Sbjct 798320 AGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGGCAAGG 798379 Query 213312 CCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAA 213370 ||||| || || | || ||||||| ||| | || |||| ||| |||| ||||| | Sbjct 798380 CCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGC-CTCCTGGAC 798438 Query 213371 GGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATG 213430 ||||| ||| |||||||||||||| |||||||| | | || | |||| | Sbjct 798439 AGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGACCTT 798498 Query 213431 GGCCAGGTACTCGTGATTGAACACGTAGC------CCCCGTCCTGCACAAACTCAGGCAG 213484 | || || | ||||| |||||| | ||| | | || ||||| Sbjct 798499 GTGCA---AC---TTCTTGAAGTCGTAGCAAGCCTCATCGTAGTTGATGAAAGAGGGCAG 798552 Query 213485 GGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTC 213544 || | ||| |||||||| || || ||||| | || | | |||||| || || || Sbjct 798553 AGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTC 798612 Query 213545 GGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGC 213604 |||||||||||| || ||||||||| || ||||||| ||| ||| ||||| | || Sbjct 798613 AGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGG-TTGCTCTTGCGGTTGC 798671 Query 213605 A-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC 213663 | | |||||||||||||||| | ||| |||||||| ||||| | | || || | Sbjct 798672 AGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGT 798731 Query 213664 TCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTT 213723 ||| || | | ||||||| | | ||| | | | | |||||||| || Sbjct 798732 ACCAAAGTTTCTGAGCCTTGA-TAGTCTTGCGACCCTTGCCCTCCT--TCTCGTACTTTT 798788 Query 213724 CGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGAC 213783 |||| || | | ||| || | || || | | || || || || ||| | Sbjct 798789 CGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGC 798848 Query 213784 ACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACA 213843 |||| || ||||||| |||| | | || | || |||||| || || |||| ||| | Sbjct 798849 ACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAA 798908 Query 213844 GCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTA 213903 | ||| ||| ||||| | || | ||| || || ||| ||||| ||||| | Sbjct 798909 GGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTGCGGAGATCAA 798968 Query 213904 GAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCC 213960 | || || |||| || | |||||| ||||| | |||||||||||| || || | || Sbjct 798969 GGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCT 799028 Query 213961 TCTTGCCGCCCTGGTCCACCAGCCTGGCCACCA----TGTTGAAGATGCGCAGGACGGGT 214016 | ||||| |||||||| | | | || | || ||||||||| || || | || Sbjct 799029 TGTTGCCACCCTGGTCGA----CATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGA 799084 Query 214017 ACCAGCCCGTTGGACTGT-CCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC--TCAGG 214073 || | ||||| || ||| |||||||| || || || || ||||| | || | | | Sbjct 799085 ACAACACCGTTCGA-TGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACG 799143 Query 214074 TTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACA 214133 ||| | | ||| || || ||||| || ||||||||||||||| ||| | | | | Sbjct 799144 GTGCACGTTCAGA--CCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGA 799201 Query 214134 GTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGC 214193 || || ||| || | || ||||| || | | | | ||||||||| || | Sbjct 799202 GTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAAT 799261 Query 214194 TGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTA 214253 |||||| | | ||| | |||||| |||||||| |||||| | | || ||| | Sbjct 799262 TGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTG 799321 Query 214254 GAGAGGAGCCTGTAGGTCTCCAGGACT 214280 || | || |||| ||||||| |||| Sbjct 799322 GACATCAGGTTGTATGTCTCCAAGACT 799348 >seq1712 Length=1031001 Score = 199 bits (220), Expect = 7e-46 Identities = 493/738 (67%), Gaps = 29/738 (4%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | ||||| |||||||| ||||| || | | ||||||||||| Sbjct 111848 CTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTC 111789 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| ||||||||||| | || || ||| | || ||| | | | || | Sbjct 111788 CATGAAGTCGAAGGGGTTGGTGGCCTTGTAAACCT-TCTCGTTGCCAAGCGCGACAAGGA 111730 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | |||| |||||| |||| ||||| | ||||||| ||||||||| | |||| Sbjct 111729 GACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGGG 111670 Query 48018 ACACGGGCAA-AGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||| || || ||||| ||||| ||||||| ||| || ||||| || | || Sbjct 111669 -CACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTAATGATA 111611 Query 48077 TGCTTAACGCGGGAC-TCTGAGGGTTTGTTGCGCAGGTGC-TTG------GCATAGAGCA 48128 | || || | |||| ||| || ||| | | ||| | | ||| | Sbjct 111610 TCCT------GGATCATCTGC----TTGCTG-GCACGACCCTTGAGGTGAGAGTGGAGGA 111562 Query 48129 TGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGA 48188 |||||||||||| |||| | || || || || ||||||| ||||||||||| | Sbjct 111561 GGCAGGCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCA 111502 Query 48189 GACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGA 48248 |||| ||||||| || | || ||||||||||| || | ||||| | ||| ||||| Sbjct 111501 GACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGA 111442 Query 48249 AGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG 48308 |||| ||||| || || ||||| || ||| | || | || || | || ||| || Sbjct 111441 AGATACCCTCAACAGCAGCGAAAGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCT 111382 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 |||||| | |||||||| |||||||| |||||| || || ||||| ||||| Sbjct 111381 GGATCCATCGGATGGCCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGT 111322 Query 48369 GGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGT 48425 ||||| | | | || | | ||| | ||||| | ||||||| | || Sbjct 111321 TAAAGAGGTAGGTTCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAG---GGAGT 111265 Query 48426 ACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAA 48485 | |||| ||||| | ||||| || ||||||||| ||||||||| | ||||| Sbjct 111264 AGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGG 111205 Query 48486 ACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAG 48545 | ||| || || ||||| ||| | || ||||| ||||| || ||||| || | Sbjct 111204 GGATCTGGACCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGACG 111145 Query 48546 CAGCAAAGAAGGCAAGGA 48563 |||| ||||| ||||||| Sbjct 111144 CAGCGAAGAAAGCAAGGA 111127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931499509346560