Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233915.1_ 202017-07-27] 2,859 sequences; 56,328,106 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2339 120 2e-21 >seq2339 Length=1374216 Score = 120 bits (132), Expect = 2e-21 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| || | || || ||| ||| || || || || || | ||||| Sbjct 542183 ACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGT 542242 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | ||| ||||||||||| ||||| || || || || |||||||| |||||||| || Sbjct 542243 TCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACC 542302 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| || ||||| || ||| ||||| ||||| | || | | ||| | Sbjct 542303 CTCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGA-CTTCCA 542361 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| || || || ||||| ||||| ||||| ||||| Sbjct 542362 GAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTG 542401 Score = 107 bits (118), Expect = 1e-17 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| || |||||||| ||| ||| || || || || || || || || Sbjct 542411 ACGGAGGCGGAGAACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGT 542470 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || | ||||| ||||||||||||||||| || || || || || |||||||| || || Sbjct 542471 TCGGCCGTCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATACC 542530 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| ||||||||| || ||| || || ||||| | | | | |||| Sbjct 542531 CTCCTTGTCCTGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGA-CCTCAA 542589 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762 | || || || || || ||||| ||||| |||| Sbjct 542590 GAGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 542622 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| | ||||| ||||| || |||||||| || |||||||| ||||| || ||||| Sbjct 542021 ATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATACCCTCCTT 542080 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| |||||||| || || || ||||| ||| || |||||||| || Sbjct 542081 GTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGAT 542140 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||||||||| || || || || Sbjct 542141 GGTCTTTCCAGTGAGAGTCTTCACAAAGATCTG 542173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268056563618132