Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233915.1_ 202017-07-27] 2,859 sequences; 56,328,106 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2317 179 1e-39 seq1712 154 4e-32 seq613 102 2e-16 seq2483 93.3 1e-13 >seq2317 Length=1589273 Score = 179 bits (198), Expect = 1e-39 Identities = 573/879 (65%), Gaps = 15/879 (2%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || | ||| ||| ||||||||| || || |||||| || | ||||| ||||| Sbjct 798598 GTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTT 798657 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| || ||||||||||| || ||| ||||| |||| ||||| |||| || Sbjct 798658 GCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGC 798717 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || ||||| ||| || | | || || || |||| |||| ||| Sbjct 798718 CTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTT 798777 Query 155810 CTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867 ||| || |||| || | ||| | | | ||||| ||||| || || || |||||| Sbjct 798778 CTCGTACTTTTCGTACAGAGCCTC--GAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGG 798835 Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATA 155925 |||| | |||||| | ||||| ||| || | || ||||||| ||| || | Sbjct 798836 CACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTT--CTTTTCAACACGCTTCATGAAAA 798893 Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGAT 155985 |||| ||||| || ||||||||| | || |||||| | ||||| | Sbjct 798894 GATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGT 798953 Query 155986 TCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAA 156045 |||| || || || | ||| || | ||||| || ||||| || || || |||| Sbjct 798954 TCTTGCGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAA 799013 Query 156046 AACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 || ||| | |||| |||||||| || ||||| |||||||| || |||||||||| Sbjct 799014 AAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACAC 799073 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162 |||||||||| || ||| || || || || ||||| ||| || | || |||| | Sbjct 799074 GAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAG 799133 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCAT 156221 || | | || | | || ||||||||||| | |||| || || || || || Sbjct 799134 CACGGATACGGTGCACGTTCAGACCAATACCACCAG-CCATCTTGGAGATCATGGCACAG 799192 Query 156222 TCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT-TGATAGTAGATAGCA 156280 ||| | ||||| | | || || |||||| || || | ||| | | ||| |||| Sbjct 799193 GTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGA-AGCA 799251 Query 156281 CGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAA 156340 || ||||| || | || || || |||||||| || || || | ||||| | || Sbjct 799252 AGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAA 799311 Query 156341 ATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAAT 156400 | || | ||||| | |||||||||| | ||| | || | || ||| Sbjct 799312 GAATTTGCTGGACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAAT 799371 Query 156401 ACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCG 156460 || | ||| || | ||| ||| |||||||| ||||| |||||| || ||||| Sbjct 799372 ACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTT 799431 Query 156461 CAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 || ||||||| || |||| ||| || || || || || Sbjct 799432 GAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 799470 >seq1712 Length=1031001 Score = 154 bits (170), Expect = 4e-32 Identities = 467/717 (65%), Gaps = 6/717 (1%) Strand=Plus/Plus Query 133232 GCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGA 133291 || || || |||||| |||||||||||| || || | | || || | || Sbjct 111132 GCTTTCTTCGCTGCGTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCGATTCAGTGGC 111191 Query 133292 GAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATC 133351 || || || | |||| || ||| ||| || || | ||||| |||||| || ||| Sbjct 111192 GAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACATC 111251 Query 133352 CATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCAC 133411 || || || || || || ||||| || |||||||| || ||| |||| | Sbjct 111252 CACTCCGAGACCTACTCCCTGCTCATTGACACCTACATCAAGGAGCCCGCCCAGCGAACC 111311 Query 133412 AAACTATTCAACGCCATTAGCGAATTTCCT-TGTATTAAAAAGAAATCTGACTGGGCTAT 133470 | || || ||||||||| | || ||| || || |||||| | |||||||| || Sbjct 111312 TACCTCTTTAACGCCATT-GAGACCATCCCCTGCATCCGAAAGAAGGCCGACTGGGCCAT 111370 Query 133471 TAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGT 133530 |||||||||||| ||| | ||||| |||||||||||||| |||| || Sbjct 111371 CCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCTTTCGCTGCTGT 111430 Query 133531 AGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTAT 133590 ||||| || || ||||||||||| ||| |||||| || ||||| || ||||||||| | Sbjct 111431 TGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCT 111490 Query 133591 TCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGA 133650 | || || ||| || || ||||| || || || | || |||| |||||||| || Sbjct 111491 CATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCACACTGA 111550 Query 133651 ATTTGCCGTTTTACTTCACTCTAAATTAGAGCGACCACTCAAAAAGAATAAGATTGAAGA 133710 |||||| | || |||||| | | || | | || ||| | | ||| | || Sbjct 111551 CTTTGCCTGCCTCCTCCACTCTCACCTCAAGGGTCGTGCCAGCAAGCAGATGATCCAGGA 111610 Query 133711 AATTATTAGAGAAGCGGTTGAAATTGAGGTTGAATTTATCAATAGTGCTCTGCC--GTGC 133768 || |||| || || || |||||| || || ||| | ||||| || |||| Sbjct 111611 TATCATTACTGATGCCGTCACCATTGAGCAGGAGTTCCTCACTGAGGCTCTTCCCTGTGC 111670 Query 133769 CGTTTAATTGGTATGAATGATGTGCTGATGCAGCGTTATATTGAATTTGTAGCTGACAGA 133828 | || | || ||||| || || ||| ||| || ||||| || || ||||| | Sbjct 111671 CCTT--CTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCGCTGATCGT 111728 Query 133829 TTGGCCGTTCAGTTAGGTGGGGATAAGATTTACGGTTCCGCCAATCCATTCGACTGGATG 133888 | || | | || || ||| ||||| || |||| || ||||||| ||| Sbjct 111729 CTCCTTGTCGCGCTTGGCAACGAGAAGGTTTACAAGGCCACCAACCCCTTCGACTTCATG 111788 Query 133889 GAGAGCATTAGCATTGAATCAAAGACTAATTTCTTCGAGGCGAGGGTAGCCGAATAC 133945 |||| ||| | ||| ||||| || ||||||||| | | || ||||| ||| Sbjct 111789 GAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGACTAC 111845 >seq613 Length=409690 Score = 102 bits (112), Expect = 2e-16 Identities = 390/600 (65%), Gaps = 38/600 (6%) Strand=Plus/Plus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | || || ||||| | | ||||||| || | ||| | || || Sbjct 121750 ATGAGTCCACAAATCTCGCAGACGTGGACACGGAAAGCATCCGACACCTCAAACAGACGC 121809 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| || |||||||| | |||||||||||||| |||||||| ||||| Sbjct 121810 TCCTTCAGGAAAGCAGCGGCACCGTGAGCGATCATACAATCACGTTCCATTTCTCCGAAT 121869 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGA-GAT-TAACCATAG 251584 || ||||||||||| ||||| | |||||| |||| || || || | ||| | | | | Sbjct 121870 CGGAGACCACCATCACGAGCACGACCCTCAACAGGTTGTCGGGTCATGATCTGA--ACTG 121927 Query 251585 GACC----GATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 |||| | ||||| || ||| || | ||||| || |||||||||||| Sbjct 121928 GACCACGAGCACGAGCG----TGAATCTTGTCGTCCACCATGTGACGAAGACGCTGGTAG 121983 Query 251641 AATGCGGGACCGATGAAGA----TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATA 251696 | | || |||| || | || || | || || | |||||| || |||| || Sbjct 121984 TAGGTAGGTCCGAAAAACACCTGGGCACGGA-GCTTTCG---TCCAGTGTGACCGTTGTA 122039 Query 251697 CATAACTTCGTTTCCATTAGATTCATAACCAAGTTTCTGTAGCTCTGAAGCAATATCAC- 251755 ||| || ||| || ||||| ||||| | ||| ||| |||| | || Sbjct 122040 CATGACCTCGAAACCTCGAGATTGGTAACCGTGCTTC-----CTCAGAAGTTCTGAGACT 122094 Query 251756 CAATCTTGAATTTGCTAAAACTG------GTGCCGTCTCCGTAAAGACCCATTTGAATCA 251809 |||| || | || | | || ||| |||| || | | ||| | | Sbjct 122095 GAATC--GACTGTGACATCAGTGAACGGTGTGGCGTCACCCTCCATACCTTCCAGCGTTG 122152 Query 251810 ACACTTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCAT 251869 | || |||| | ||| ||| ||| ||||| || ||||| || ||||| || | Sbjct 122153 AAACCTTGCTAAGAAGACACTCAATCAAATGGGCAATTGTCATTCGCGATGGAATGGCGT 122212 Query 251870 GGGGATTGATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT 251929 | |||||||| ||||| ||||| | || || || |||| |||||||||| | | Sbjct 122213 GAGGATTGATAATGATATCGGGAGTAAGACCTTCTCGGCTGAAAGGCATATCCTCCT-GT 122271 Query 251930 CAATAATGT--TTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 | || |||| || || || |||||||| |||||||||||| ||||| |||||||| Sbjct 122272 CGAT-ATGTAACACCGATTGTACCCTTTTGACCGTGACGAGAAGCAAACTTGTCACCAAT 122330 >seq2483 Length=786084 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || |||||| | || ||||| |||||||| |||||||| Sbjct 710647 AGAATTTCCTTGAGACGTGGCACACCAAGAGTAACGTT---CTTGGACGACACACCAGCG 710703 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||| || ||||| || | ||||||| |||||||||||| || || || | Sbjct 710704 AAATGGAAGGTGTTCAGTGTCATCTGAGTAGCAGGCTCACCAATAGACTGCGCAGCCAGA 710763 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 710764 ACACCAACCATTTCACCAGG 710783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471763685941483