Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233915.1_ 202017-07-27] 2,859 sequences; 56,328,106 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1712 197 2e-45 seq2317 192 7e-44 seq2661 82.4 9e-11 >seq1712 Length=1031001 Score = 197 bits (218), Expect = 2e-45 Identities = 538/812 (66%), Gaps = 15/812 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| |||| ||||||||||||||||| ||||| || | | | ||| |||||||| Sbjct 111844 TAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 111785 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || || ||||| | | || ||| | || | |||| | |||||||| Sbjct 111784 AAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTG-CCAAGCGCGACAAGGAGACG 111726 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | |||| |||||||||||| ||| || |||||||| |||| ||| ||| Sbjct 111725 ATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGGGCACA 111666 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || || || |||| ||| ||||||| || || || | ||| | || Sbjct 111665 GGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTAATGATATCCTG 111606 Query 129967 AATGGTCTCCGTGC---CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 || ||| | ||| || | | ||| | || | || ||| || |||||| || Sbjct 111605 GATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCAAAGTC 111549 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| |||||||| ||||| |||||||| || || |||||| |||||| |||||||| Sbjct 111548 AGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAG 111489 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||||| | |||||| || | || | ||| ||||||||| ||||| || Sbjct 111488 ACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAAC 111429 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCAT 130203 | ||||| |||| |||||||| ||||||||| | ||| | | ||| || Sbjct 111428 AGCAGCGAAAGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGAT 111369 Query 130204 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 130263 ||||| | ||||| || ||| || |||| ||||| || || | |||||| | | Sbjct 111368 GGCCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAAGAGGTAGGT 111309 Query 130264 CTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGAC 130323 | | || || |||||||| | || ||||| || || || ||| |||| Sbjct 111308 TCGCTGGGCGGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGAT 111249 Query 130324 CAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCAT 130382 | | ||| || | ||| | ||||||| | || || ||| ||||| ||||| Sbjct 111248 GTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTGGACCTC-G 111191 Query 130383 CTGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCC 130441 | | ||| | | || ||||| ||||| ||||| ||| |||| || || || Sbjct 111190 CCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGACGCAGCGAAGAAAGCA 111131 Query 130442 AGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAGA 130498 ||||| | | ||| ||| |||| | ||| || | |||||||| | ||| Sbjct 111130 AGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTCATGGAGA 111071 Query 130499 TCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 ||||| || ||||| | |||||| |||||||| Sbjct 111070 TCCTTGGAAAGATCAATCTCCTCAGCAGTCCA 111039 >seq2317 Length=1589273 Score = 192 bits (212), Expect = 7e-44 Identities = 1164/1842 (63%), Gaps = 43/1842 (2%) Strand=Plus/Plus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 |||||||||| || || |||| || || ||||||||||| || |||||||| | Sbjct 797649 TGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTCTTGAGGC 797708 Query 117865 CCTGCTTCCAGGCATACATA-TGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATG 117923 | |||||||| | | || | ||||| || | |||| | || || | |||| Sbjct 797709 CAAGCTTCCAGCC-TGCAAAGTGCATACTGGTGATCTTGCCCATCGTGGGGTCCTTCATG 797767 Query 117924 AAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 117983 || ||||| ||||| ||||| |||||| || ||||| || ||||| | || Sbjct 797768 TGGATGTTCAGTGACTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACG 797827 Query 117984 ACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATA 118043 || | | ||| ||||| || ||| | || || ||| | ||| | ||||| Sbjct 797828 ACTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAGAGCCTTGACATCGGCAGGGATG 797887 Query 118044 TCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGAC 118103 | || || || ||||| ||| | | | ||| | | ||||||| | | ||| Sbjct 797888 TTGGGAATGTTCTGAATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGAC 797947 Query 118104 CAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCC 118163 || ||||| || | || |||| | || |||||||| |||||||| Sbjct 797948 CACAGACCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCA 798007 Query 118164 GCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCC 118223 ||||| |||| | ||||| |||| ||||| ||||| |||||||| ||||| ||| Sbjct 798008 GCGAGAACACGTCGTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCC 798067 Query 118224 AAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCC 118283 | || |||| || ||| || ||||| || || | ||| || |||||||||| || Sbjct 798068 AGAATCTGGGAGGTACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCG 798127 Query 118284 TTTTCCCTAATGCGTTC-CTTGA-GAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCT 118341 | | | | | | | | || || ||| |||||||| || | | || | | Sbjct 798128 TGTGTCTTGA--CTTCCTCTCGAAGAGTCTCCCAGTCCCAGAGGTCAGAGGGCTTGACGT 798185 Query 118342 GCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 118401 |||||| || |||||||||||||| | || || || || || | || || || | Sbjct 798186 TCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTGGAGTAGG 798245 Query 118402 GGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTT 118458 | ||||| ||| |||| | ||||| || |||||| ||||| || || || | Sbjct 798246 GACCCTCCTCCTTAGCCAGCTGCACGGAG---GCAGTGAGGGCAGCGTGGTAAATGGTCT 798302 Query 118459 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-A 118517 | || || | || | | |||||| || || || | | || || | | Sbjct 798303 CGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCG-CAGAGCA 798361 Query 118518 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 118577 | || |||| || || || || ||||| || ||||| || || || | ||| ||| Sbjct 798362 AGGAAAGCATCGGCAAGGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTG 798421 Query 118578 TTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 118637 || ||||| || || || || ||| |||||| | | | || || || | Sbjct 798422 TTGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATA 798481 Query 118638 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT---TG 118694 ||||||| ||| | || | ||| | | | || | || || ||| || | || Sbjct 798482 ACAACCTGACTGACCTTGTGCAACTTCTTGAAGTCGTA---GCAAGCCTCATCGTAGTTG 798538 Query 118695 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 118754 | | || || || | || || || || || |||| | ||| || || | Sbjct 798539 ATGAAAGAGGGCAGAGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAG 798598 Query 118755 TACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 118814 ||||| |||||||| ||||||| ||| || || ||||| || | ||||||||| || Sbjct 798599 TACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTG 798658 Query 118815 GACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGAC 118874 ||| ||| || ||||||||||| |||||| |||| | || ||||| || |||| | Sbjct 798659 CTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCC 798718 Query 118875 TTGAGAATAGCCTTCCAGACATCGGCAGC--TGGCACAGTGGCGTTGGCTCGCCCCTCTT 118932 | ||||| || | ||| | | ||| || | | ||| || | ||||| | Sbjct 798719 TCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCG-ACCCTTG-CCCTCCT 798776 Query 118933 CCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTG 118992 |||||||||| ||| || || || ||||| || || | || | ||| || || Sbjct 798777 TCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGC 798836 Query 118993 CCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGT 119052 || | ||||| | || | ||| | || || ||||| ||||||||||| || | Sbjct 798837 ACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGAT 798896 Query 119053 CTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGA 119112 | |||||||| || || ||| || || || || | || || | || || || Sbjct 798897 CAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCT 798956 Query 119113 GACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG 119172 || | || | || || | || ||| | |||||| || || ||||| | || | | Sbjct 798957 TGCGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAG 799016 Query 119173 -AC-----CCCTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACAC 119226 || | ||| | | ||| |||||| ||||| | |||||| ||| || |||| Sbjct 799017 CACCGGGTCGCTT--GTTG-CCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACAC 799073 Query 119227 GAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATT 119284 ||||||| |||| | ||| | ||| || || || || ||| || ||| | | | Sbjct 799074 GAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGAGCC--AGT 799131 Query 119285 GGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCA 119344 || | || | ||| | || || ||||||||| || ||| ||| ||||| || || Sbjct 799132 AGCACGGATACGGTGCACGTTCAGACCAATACCACCAGCCATCTTGGAGATCATGGCACA 799191 Query 119345 CTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCA 119404 | ||||| | ||||||| || || || ||| |||| | | | | |||||| Sbjct 799192 GGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCA 799251 Query 119405 GCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAA 119464 |||| ||| ||| || || || ||||||||||| || || | || || |||| Sbjct 799252 AGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAA 799311 Query 119465 CA--TACCTTGGGACATCTTGTCGTAGGTCTCCAAGAC-GGCGGGAATGTCTTCCCCGTG 119521 | | || ||||||| || ||| ||||||||||| || | || || || || Sbjct 799312 GAATTTGCT--GGACATCAGGTTGTATGTCTCCAAGACTCGCTCG-ATATCATCACCCCA 799368 Query 119522 AATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAG 119581 |||||| | || || ||||| | ||||| || || || | | |||| || | Sbjct 799369 AATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAAT 799428 Query 119582 CCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 119623 | | ||||||| |||||| ||||||| ||||| || Sbjct 799429 CTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 799470 >seq2661 Length=413000 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 180879 CAACTTGGCACCGTAGCCATTGCGTCCACCAACAATTCTCTTCTTGTTGTCATCGTAGTT 180938 || |||||||||||| || ||||| |||||||| || |||||| || ||| ||| |||| Sbjct 255796 CAGCTTGGCACCGTAACCGTTGCGACCACCAACGGTTTTCTTCTCGTCGTCGTCGAAGTT 255737 Query 180939 TGTACTCGTGAGGAGGTGACCAAAGGTAAGTTCTGGATTCCAAATATCCTCCTTTTCGTG 180998 | || || | || || || ||| |||| || ||| | | || | |||||||||||| Sbjct 255736 GGAACCCGCCAACAGATGTCCGAAGATAAGCTCAGGAATGTAGATCTTCTCCTTTTCGTG 255677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618413098672040