Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233915.1_ 202017-07-27] 2,859 sequences; 56,328,106 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2317 318 7e-82 seq2339 176 5e-39 seq2129 156 5e-33 seq2368 129 7e-25 seq1712 118 1e-21 >seq2317 Length=1589273 Score = 318 bits (352), Expect = 7e-82 Identities = 1151/1767 (65%), Gaps = 69/1767 (4%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || || || ||||||||||| ||||||||||| ||||||||| | |||| Sbjct 797672 GCCTGTGTACGAAGGTAGTACATGCCAGTCTTGAGGCCAAGCTTCCAGCCTGCAAAGTGC 797731 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 ||| ||| ||| | | ||||||| || |||| ||||||||| ||||| |||||| Sbjct 797732 ATACTGGTGATCTTGCCCATCGTGGGGTCCTTCATGTGGATGTTCAGTGACTGGGACTGA 797791 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAA-TTGACTTTTGTGGAATTTCCCA 80210 ||||| || || ||||| || ||||| | || | ||| | | | | || ||||| Sbjct 797792 TCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGACTTGGCGCT-GAGAGATCTCCCA 797850 Query 80211 TACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCC 80267 || || ||||| |||| | || | || |||| || | | | | || Sbjct 797851 AACGGTCTTATACAGAGCCTTGACA---TCGGCAGGGATGTTGGGAATGTTCTGAATGGA 797907 Query 80268 ACCGTCCTTTACAATTT---GATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAG 80324 ||| | || |||| | || |||| || | ||| | ||| | | | || Sbjct 797908 ACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCACAGACCCATGTCGACAAG 797967 Query 80325 ATCTTTCACAAG---GTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAG 80381 || || | || | | ||| || | || |||| || ||||| || || | Sbjct 797968 GTCCTTGAGCAGCCAGGGGTTGACAACCTGGA---ACTCACCAGCGAGAACACGTCGTTG 798024 Query 80382 ATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCT 80441 || | ||| | ||||| ||||| || ||||||||| || || ||||| | || || Sbjct 798025 GTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACT 798084 Query 80442 CGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTC 80501 || || ||||| || | | | ||| || || | |||||| |||||| ||||| Sbjct 798085 GGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACTTCCTC 798144 Query 80502 GCGCAAA---TCTGA---CCAAAAATCAACCCCAACGCTGTGACC--CCACATGTCGTGC 80553 || | | || | ||| | ||| | ||| |||| |||||||||| | Sbjct 798145 TCGAAGAGTCTCCCAGTCCCAGAGGTCAG----AGGGCT-TGACGTTCCACATGTCGAAC 798199 Query 80554 TGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTG 80613 || | ||| ||||| || || || || || ||| || ||| || |||||| ||| Sbjct 798200 TGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTGGAGTAGGGACCCTCCTCCTTA 798259 Query 80614 GCCAGCTCACACGACTCCA-TAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTT 80672 ||||||| |||| || | ||||| ||||| |||||| ||| |||| |||||| Sbjct 798260 GCCAGCTG-CACGGAGGCAGTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTT 798318 Query 80673 CACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAG 80732 | | || |||| || ||||| | || || || | ||| | || || || Sbjct 798319 GAGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGGCAAG 798378 Query 80733 GCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCCGGAA 80791 ||||||||| || | | || || ||||||||| |||| | | || | ||||| | | Sbjct 798379 GCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAG-CCTCCTGGA 798437 Query 80792 TTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACAT 80851 ||||| ||| |||||||| |||||||||||| |||||||| | | || | Sbjct 798438 CAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAACAACCTGACTGACCT 798497 Query 80852 CATGAAGTTTCTGAAAGTCGAATT--GGTTCCCC----TTCACAAATGCCGGAAGGCTCA 80905 || | |||| |||||| | | || | || | || | || || || Sbjct 798498 TGTGCAACTTCTTGAAGTCGTAGCAAGCCTCATCGTAGTTGATGAAAGAGGGCAGAGCCA 798557 Query 80906 GGGACGCCAGATTGCACACGGCCACCTCTTCAG---CATCTGTAAACTCGACGATTTCCG 80962 | || || || ||||| || || ||||| |||| || | ||| ||| | ||||| | Sbjct 798558 GAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCA-CAGTA--CTCAATAATTTCAG 798614 Query 80963 TGCACAAATTAGAAGACTTA--ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCA 81020 |||||| || || ||| || ||||| ||||| || ||||| |||| |||||| Sbjct 798615 TGCACAGGTTGGAG--CTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCA 798672 Query 81021 AGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTC 81080 || ||||||||| |||| | ||| | |||||||| ||| | || || ||||||| Sbjct 798673 GGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTA 798732 Query 81081 CCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA 81140 ||||| | | ||||||| |||||| ||||| || | | ||||| |||| Sbjct 798733 CCAAAGTTTCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTTCTCGTACTTTTCGTA 798792 Query 81141 AGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACA 81199 | ||||||| | |||| | ||| | | |||| | ||||||||||| ||||||| Sbjct 798793 CAGAGCCTCGAACTCCTCTCCGTAGCAGT-CGGCGAGGCCAGGGCACTCGTTGGGGCACA 798851 Query 81200 TCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGG 81259 |||| ||||||| || || || ||| |||||||||| ||||||||||| |||| Sbjct 798852 TCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGG 798911 Query 81260 CGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAA 81319 || ||| ||||| ||| || ||||||| | ||| ||||| ||| | || || | Sbjct 798912 CGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTGCGGAGATCAAGGA 798971 Query 81320 AGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC-----CCCTTGC 81373 | || | || || | ||||| ||||| || || | ||| | | || | |||| Sbjct 798972 ACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTG- 799030 Query 81374 GACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGA 81433 ||||||||||| ||| || || ||||| ||| || ||||| | |||||| | | Sbjct 799031 --TTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAA 799088 Query 81434 TACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCT 81491 ||| | || |||||| ||||| |||| || || | || || || ||| Sbjct 799089 CACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCA 799148 Query 81492 GATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTC 81551 || ||||| || ||||| | | ||| || ||| ||||| || | || || Sbjct 799149 CGTT--CAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATC 799206 Query 81552 ATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGG 81611 || |||||||| || || || | ||||| |||| |||||| || ||||| || || Sbjct 799207 GTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTG-GG 799265 Query 81612 GCT-TTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACA 81670 ||| | |||||| ||||| || || || | || || |||| | | | |||| Sbjct 799266 GCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTGGACA 799325 Query 81671 TCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACAC 81730 |||||| || || ||| ||| || ||||| ||||| |||||| | || |||| Sbjct 799326 TCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAATACCAACAGACACAC 799385 Query 81731 GCATAAACATGTACTG-GGGCGTCTCG 81756 |||| | ||||| ||| ||||| |||| Sbjct 799386 GCATGATCATGTGCTGAGGGCG-CTCG 799411 >seq2339 Length=1374216 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || || ||||| |||||||| || || |||||| Sbjct 542404 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 542345 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| ||||| || || |||||||||||||| |||||||| || || Sbjct 542344 GATACCATTGATAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAA 542285 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| |||||||| ||||||| || || || | ||||| || Sbjct 542284 CAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACAAC 542225 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || |||||||| ||||| || | || | |||||||| ||||| Sbjct 542224 ATTCAGAAGGAATCTACTCTCCACTTGGTTCTCCGTCTTCGTGGTGG 542178 Score = 176 bits (194), Expect = 5e-39 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || |||||||| || ||||||||||| ||||| |||| ||| | Sbjct 542620 GTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGATACCATCGAC 542561 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || ||||||||||||||||| || ||||| ||||||||||| || || Sbjct 542560 AATGTTAAGTCAAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGCCTGATC 542501 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| ||||||||||| || | || ||||| || ||||| || | || |||||| Sbjct 542500 TTTGCTGGAAAGCAACTCGAAGACGGCCGAACCCTTGCCGACTACAACATTCAGAAGGAA 542441 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || |||||||| || | || || || ||||| Sbjct 542440 TCTACCCTTCATCTCGTTCTCCGCCTCCGTGGTGG 542406 Score = 170 bits (188), Expect = 2e-37 Identities = 178/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || || ||||| || || |||||||| ||||| || Sbjct 542176 ATGCAGATCTTTGTGAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTCGAGTCCAGT 542117 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||| || ||||||||||||||||| ||||| || || ||| Sbjct 542116 GACACTATCGACAACGTGAAGAGCAAGATTCAGGACAAGGAGGGTATTCCCCCTGATCAG 542057 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || ||||||||||| | || |||| ||| ||| | ||| ||||| || Sbjct 542056 CAGCGTCTTATCTTCGCTGGTAAGCAGTTGGAAGATGGTCGCACCTTGAGC-GACTACAA 541998 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || |||||||| || || | || ||||||||||| || Sbjct 541997 CATCCAGAAGGAGTCAACTCTTCACCTCGTTCTCCGACTTCGCGGTGGCCA 541947 Score = 136 bits (150), Expect = 5e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| |||||||| | ||||||||||| || || || ||||||||||| Sbjct 542917 ATCATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCT 542858 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | || | ||| | ||| | || ||||||||||||||||| || || || ||| Sbjct 542857 TCCGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGAC 542798 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||| || | ||||| || || ||||| || ||||| | || || || | || || Sbjct 542797 CAGCAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTAC 542738 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | || ||||| || |||||||| || || | || || || ||||| Sbjct 542737 AACATTCAGAAGGAGTCTACTCTTCACCTTGTTCTCCGCCTCCGTGGTGG 542688 >seq2129 Length=568468 Score = 156 bits (172), Expect = 5e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || || |||||||| ||||| Sbjct 361493 ATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCC 361434 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || || |||||||||||||| || || || |||||| Sbjct 361433 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 361374 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 ||||| || || |||||||| ||||| |||||||||| || ||||| ||| ||||| || Sbjct 361373 CAGCGACTTATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTGAGC-GACTACAA 361315 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| | || || || ||||| Sbjct 361314 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGCCTCCGTGGTGG 361267 >seq2368 Length=236445 Score = 129 bits (142), Expect = 7e-25 Identities = 137/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || |||||||| || || || ||||| ||||| || | |||| Sbjct 97440 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATT 97381 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| ||||| || ||||| ||||| || Sbjct 97380 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 97321 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || ||||||||||| |||||||||| || || || | ||||| || |||| ||| Sbjct 97320 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 97261 Query 27595 G 27595 | Sbjct 97260 G 97260 >seq1712 Length=1031001 Score = 118 bits (130), Expect = 1e-21 Identities = 150/206 (73%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGAT---GAATCGTGGGTCGTCGTTTGGTCAGCGT 64719 || ||||| || ||||||||||| ||||| | || | || || |||| |||||| Sbjct 111351 AAGAAGGCCGACTGGGCCATCCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGT 111410 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 |||| ||||| || ||| || || || ||||| ||| | ||| ||||| ||| Sbjct 111411 CTCGTTGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTC 111470 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||||| || ||||| || || ||||| |||||| | || || |||||||| |||||||| Sbjct 111471 TGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGT 111530 Query 64840 GACGAGGGGCTCCACCAAGAATTTGC 64865 || ||||| || ||| || ||||| Sbjct 111531 GATGAGGGTCTTCACACTGACTTTGC 111556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570290018532080