Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233915.1_ 202017-07-27] 2,859 sequences; 56,328,106 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2339 113 4e-20 >seq2339 Length=1374216 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || || ||| | |||||||| ||||| || | ||| Sbjct 542404 ATGCAAATCTTCGTCAAGACCCTCACTGGAAAGACCATTACTCTGGAAGTCGAGTCATCC 542345 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || || || ||||| || || || || ||||||||| Sbjct 542344 GATACCATTGATAATGTGAAGAGCAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAA 542285 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| ||||| ||| | || || | || ||||||| |||||| Sbjct 542284 CAGCGACTCATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACTCTTTCCGACTACAAC 542225 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| || || | || |||||| | ||| | || ||||| || Sbjct 542224 ATTCAGAAGGAATCTACTCTCCACTTGGTTCTCCGTCTTCGTGGTGGTAT 542175 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||||||||| | || || || || || || | || Sbjct 542915 CATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTC 542856 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || || | ||||| || ||||| ||||| || ||||| || || || || Sbjct 542855 CGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCA 542796 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || || || || | ||||||||| || | || ||| | || | || |||||||| Sbjct 542795 GCAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAA 542736 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||| || | || | ||| | || | || ||||| || Sbjct 542735 CATTCAGAAGGAGTCTACTCTTCACCTTGTTCTCCGCCTCCGTGGTGGTAT 542685 Score = 98.7 bits (108), Expect = 9e-16 Identities = 156/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 26994 ATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCG 27053 ||| | || || || || || |||||| | || |||||||| || || ||||||| | Sbjct 542626 ATAGTCGTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGATACC 542567 Query 27054 ATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGT 27113 || || | || || ||| ||||| ||||| || || || || || || || ||||| Sbjct 542566 ATCGACAATGTTAAGTCAAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAGCAGCGC 542507 Query 27114 TTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAA 27173 | || | || || || ||| | |||||| | ||| || |||| ||||||||||| Sbjct 542506 CTGATCTTTGCTGGAAAGCAACTCGAAGACGGCCGAACCCTTGCCGACTACAACATTCAG 542447 Query 27174 AAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||| | ||| | ||| | || | || ||||| || Sbjct 542446 AAGGAATCTACCCTTCATCTCGTTCTCCGCCTCCGTGGTGGTAT 542403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434902857103680