Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233915.1_
202017-07-27] 2,859 sequences; 56,328,106 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq2129 145 2e-29
seq2339 143 6e-29
seq2368 138 3e-27
seq2317 113 1e-19
seq835 107 5e-18
>seq2129
Length=568468
Score = 145 bits (160), Expect = 2e-29
Identities = 161/215 (75%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| |||||||| ||||| || || |||| ||||| ||| || || | |||||
Sbjct 361282 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCC 361341
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||| ||||||||||| || ||||| || || || || ||||||||
Sbjct 361342 TCGAGCTGCTTGCCAGCAAAGATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 361401
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || ||||||||||| || | ||||| || | |||||||||
Sbjct 361402 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 361461
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
|| ||||| | || || | ||| | ||||| ||
Sbjct 361462 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 361496
>seq2339
Length=1374216
Score = 143 bits (158), Expect = 6e-29
Identities = 165/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | || || | ||||||||| ||||| || || | ||||| |||| | |||
Sbjct 542183 ACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGT 542242
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
|| ||||| || || ||||| ||||||||||| ||||| ||||| ||||| ||||||||
Sbjct 542243 TCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACC 542302
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| ||||||| || ||||| || || | || || || |
Sbjct 542303 CTCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAG 542362
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || ||||| || || | || || | ||| | ||||||
Sbjct 542363 AGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 542404
Score = 129 bits (142), Expect = 1e-24
Identities = 152/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||||| || || ||||| ||||| || || || |||| ||||| ||| ||| ||
Sbjct 541956 CGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTG 542015
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| |||||||| | |||||| |||||||||||||| || || || || || ||||||||
Sbjct 542016 CGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATACCC 542075
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|||||||| || ||||| |||||| ||||| ||||| || || || || |
Sbjct 542076 TCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGG 542135
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698
||||| ||||| || || | ||| ||
Sbjct 542136 GTGATGGTCTTTCCAGTGAGAGTCTT 542161
>seq2368
Length=236445
Score = 138 bits (152), Expect = 3e-27
Identities = 138/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| ||||| |||| | ||||| ||||| || |||||||| |||||||||||
Sbjct 97262 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 97321
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
||||| |||||||| || ||||| || |||||||| |||||||| ||| ||| ||
Sbjct 97322 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 97381
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704
|||||||| |||| || || || | ||||| ||||||||||||| || || | |||
Sbjct 97382 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 97440
>seq2317
Length=1589273
Score = 113 bits (124), Expect = 1e-19
Identities = 188/272 (69%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559
|| |||||| |||| || | ||| || ||||||| ||||| || | || |||
Sbjct 798650 TTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCA 798709
Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619
| || || | |||||| | |||||||| ||||| || | ||| | | ||||
Sbjct 798710 GTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCGACCCTTG 798769
Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679
|| ||| ||||||||||||||||||| |||| || || | ||||||| ||| ||||
Sbjct 798770 CCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGG 798829
Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739
|| || || || ||||| | || |||| || || | |||| || | |||||||
Sbjct 798830 CCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCATG 798889
Query 193740 AAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771
|| || |||| |||||| |||| ||||||
Sbjct 798890 AAAAGATCAGGGATCCAAAGGGCGAGGAAAAG 798921
>seq835
Length=45725
Score = 107 bits (118), Expect = 5e-18
Identities = 197/281 (70%), Gaps = 7/281 (2%)
Strand=Plus/Plus
Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGAT 7499
|| || ||||||||||| | | || ||||| ||||| |||||| ||||| || |
Sbjct 13706 ACATTGTATTTAATATTCGCTCTTTTCTCTGG-ATTATTAGGTACAGCTTTTTCAGTGTT 13764
Query 7500 TATAAGGTTAGAA-TTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTT 7558
|| || | ||| |||| || || || |||| ||| | | ||||| ||| | |
Sbjct 13765 AATTAGACTTGAACTTAG-TGGGCCAGGAGTTCAA-TAT--ATTTCTAATAATCAATTAT 13820
Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618
| ||| | | ||||| || || || | | ||||| ||||| | |||||||| |
Sbjct 13821 ATAACAGTGTAATTACAGCTCACGCTATATTAATGATATTCTTCATGGTTATGCCAGCAT 13880
Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678
| ||||| || || ||||||| || | ||||||||| | |||| ||| |||||||| |
Sbjct 13881 TAATAGGTGGGTTTGGAAATTTTTTAATGCCTTTAATGGTAGGTGGTCCGGATATGGCAT 13940
Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719
| || || | || ||||||||||| |||||| |||| |||
Sbjct 13941 TCCCTAGATTAAATAATATAAGTTTCTGATTATTACCTCCT 13981
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192487516464146
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |