Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233915.1_ 202017-07-27] 2,859 sequences; 56,328,106 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2129 145 2e-29 seq2339 143 6e-29 seq2368 138 3e-27 seq2317 113 1e-19 seq835 107 5e-18 >seq2129 Length=568468 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| ||||| || || |||| ||||| ||| || || | ||||| Sbjct 361282 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCC 361341 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||||||||| || ||||| || || || || |||||||| Sbjct 361342 TCGAGCTGCTTGCCAGCAAAGATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 361401 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||||||||| || | ||||| || | ||||||||| Sbjct 361402 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 361461 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || ||||| | || || | ||| | ||||| || Sbjct 361462 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTT 361496 >seq2339 Length=1374216 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||||||||| ||||| || || | ||||| |||| | ||| Sbjct 542183 ACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGT 542242 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| || || ||||| ||||||||||| ||||| ||||| ||||| |||||||| Sbjct 542243 TCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACC 542302 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||||||| || ||||| || || | || || || | Sbjct 542303 CTCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGACTTCCAG 542362 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | || || | ||| | |||||| Sbjct 542363 AGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTGCAT 542404 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| || || ||||| ||||| || || || |||| ||||| ||| ||| || Sbjct 541956 CGAAGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTG 542015 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| | |||||| |||||||||||||| || || || || || |||||||| Sbjct 542016 CGACCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATACCC 542075 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || ||||| |||||| ||||| ||||| || || || || | Sbjct 542076 TCCTTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGG 542135 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| ||||| || || | ||| || Sbjct 542136 GTGATGGTCTTTCCAGTGAGAGTCTT 542161 >seq2368 Length=236445 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| | ||||| ||||| || |||||||| ||||||||||| Sbjct 97262 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 97321 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 ||||| |||||||| || ||||| || |||||||| |||||||| ||| ||| || Sbjct 97322 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 97381 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 |||||||| |||| || || || | ||||| ||||||||||||| || || | ||| Sbjct 97382 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 97440 >seq2317 Length=1589273 Score = 113 bits (124), Expect = 1e-19 Identities = 188/272 (69%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 193500 TTCTGGTTGTTCTTTCGACAGATGGCGTCTTTGTAGACGATGAAGGGCATGCCCACCTCC 193559 || |||||| |||| || | ||| || ||||||| ||||| || | || ||| Sbjct 798650 TTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCA 798709 Query 193560 GCTTGAGCGACGAGAATGTGATGCCAAAGTTCTTGAGCTTTCACTGTCGTTCTGGCCTTT 193619 | || || | |||||| | |||||||| ||||| || | ||| | | |||| Sbjct 798710 GTCTGGGCCTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCGACCCTTG 798769 Query 193620 CCTTCCCTCTCGTACTTTTCGTACAGTTCCTCAAAATCTTGTCCGTAGATTTCGTCGAGA 193679 || ||| ||||||||||||||||||| |||| || || | ||||||| ||| |||| Sbjct 798770 CCCTCCTTCTCGTACTTTTCGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGG 798829 Query 193680 CCGGGAGCTTCCTTTGGGCAAAAGAGACTCCAATCTCCATCACTTTCCACCCTCTTCATG 193739 || || || || ||||| | || |||| || || | |||| || | ||||||| Sbjct 798830 CCAGGGCACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCATG 798889 Query 193740 AAGAGGTCAGATGTCCAAATGGCGTAGAAAAG 193771 || || |||| |||||| |||| |||||| Sbjct 798890 AAAAGATCAGGGATCCAAAGGGCGAGGAAAAG 798921 >seq835 Length=45725 Score = 107 bits (118), Expect = 5e-18 Identities = 197/281 (70%), Gaps = 7/281 (2%) Strand=Plus/Plus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGAT 7499 || || ||||||||||| | | || ||||| ||||| |||||| ||||| || | Sbjct 13706 ACATTGTATTTAATATTCGCTCTTTTCTCTGG-ATTATTAGGTACAGCTTTTTCAGTGTT 13764 Query 7500 TATAAGGTTAGAA-TTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTT 7558 || || | ||| |||| || || || |||| ||| | | ||||| ||| | | Sbjct 13765 AATTAGACTTGAACTTAG-TGGGCCAGGAGTTCAA-TAT--ATTTCTAATAATCAATTAT 13820 Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618 | ||| | | ||||| || || || | | ||||| ||||| | |||||||| | Sbjct 13821 ATAACAGTGTAATTACAGCTCACGCTATATTAATGATATTCTTCATGGTTATGCCAGCAT 13880 Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678 | ||||| || || ||||||| || | ||||||||| | |||| ||| |||||||| | Sbjct 13881 TAATAGGTGGGTTTGGAAATTTTTTAATGCCTTTAATGGTAGGTGGTCCGGATATGGCAT 13940 Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 | || || | || ||||||||||| |||||| |||| ||| Sbjct 13941 TCCCTAGATTAAATAATATAAGTTTCTGATTATTACCTCCT 13981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192487516464146