Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002233915.1_ 202017-07-27] 2,859 sequences; 56,328,106 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2339 114 3e-20 seq2129 113 1e-19 seq2368 93.3 1e-13 >seq2339 Length=1374216 Score = 114 bits (126), Expect = 3e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| ||||| |||||||||||||| || || ||||||||||| | | ||| | Sbjct 542696 GAGGCGGAGAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCG 542755 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 || || || || || |||||||| || |||| | |||||||| | | ||| || | Sbjct 542756 GCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGT-TGCTGGTCAGGGGGGATGCCCT 542814 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 |||| || ||||| || |||||| | || | |||| ||| ||| || || || | Sbjct 542815 CCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGG 542874 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||| || | ||||| ||||||| |||||| Sbjct 542875 TGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 542914 Score = 107 bits (118), Expect = 4e-18 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||| || || |||||||| ||||| || ||||||||||| ||| || || | Sbjct 541959 AGTCGGAGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGA 542018 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| | || || ||||||||||| | |||||| || | | || || ||| Sbjct 542019 CCATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATACCCTCC 542078 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGAG 152064 || || ||||| || || || | || | ||| ||| | ||| || ||||| | Sbjct 542079 TTGTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGA--CTCGACCTCAAGGG 542136 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || || |||||||||||||| |||| |||||| Sbjct 542137 TGATGGTCTTTCCAGTGAGAGTCTTCACAAAGATCTGCAT 542176 >seq2129 Length=568468 Score = 113 bits (124), Expect = 1e-19 Identities = 160/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| || || || || ||||| || ||||||||||| ||| | || | Sbjct 361275 GAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCG 361334 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || || |||||||| | ||||||||| | | ||| || || Sbjct 361335 TCCATCCTCGAGCTGCTTGCCAGCAAAGATAAGTCGCTGCTGGTCAGGGGGGATGCCCTC 361394 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | | |||| ||| ||| || ||||| || Sbjct 361395 CTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGT 361454 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110 || || || |||||||| ||||| ||||| | |||||| || || Sbjct 361455 GATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCATCTTGCC 361499 >seq2368 Length=236445 Score = 93.3 bits (102), Expect = 1e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| |||| | ||||| ||||| || || || || |||||||| Sbjct 97262 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 97321 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||| ||||||| | || || ||||| || || || || |||||| | || Sbjct 97322 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 97381 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095 | | |||| || ||| || || || || || || |||||||| || ||||||||||| Sbjct 97382 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 97440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153778534462389