Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002234195.1_ 202017-07-27] 3,146 sequences; 56,132,059 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2959 190 3e-43 seq1147 102 1e-16 >seq2959 Length=1076507 Score = 190 bits (210), Expect = 3e-43 Identities = 594/907 (65%), Gaps = 22/907 (2%) Strand=Plus/Minus Query 71749 ATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 71808 |||||||||||||| || || | |||||| || | || | ||| || ||||| Sbjct 630463 ATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTG 630404 Query 71809 TTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATA 71868 ||| || |||||||| || || || || || | || || ||| |||| | || | | Sbjct 630403 CGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGA 630344 Query 71869 ATCGCTTTCCAGACGACTC-GAGCCTTTATTATATTCTTGTATCTCTT---TTCTCTTTC 71924 || || | ||| | | || |||||| | ||| ||||| | ||| || | || Sbjct 630343 ATGGCGTACCA-AAGTTTCTGAGCCT---TGATAGTCTTGCGACCCTTGCCCTCCTTCTC 630288 Query 71925 GTA--TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCA-TTGTCTAATCCAGGACA 71981 ||| || ||| | | | |||||||| ||| || |||| | | | | ||||| || Sbjct 630287 GTACTTTTCGTACAGAGCC--TCGAACTCCTCT-CCGTAGCAGTCGGCGAGGCCAGGGCA 630231 Query 71982 TTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGA 72039 || || || ||||||| | ||| || || | || ||| || || ||||| || ||| Sbjct 630230 CTCGTTGGGGCACATCAGCGTCCAGTCGCCGT--TCTTTTCAACACGCTTCATGAAAAGA 630173 Query 72040 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 72099 ||||| |||||||| || | || || || | || | |||||| || || ||| Sbjct 630172 TCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTC 630113 Query 72100 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 72159 || ||||| |||||| | | | |||||| ||||| || || | ||| ||||| | | Sbjct 630112 TTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAA 630053 Query 72160 ACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 72219 | || || || ||||| || ||||| || | || | ||| ||||| || | || | Sbjct 630052 GCACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGA 629993 Query 72220 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 72279 | ||| |||| || ||| || |||| ||| ||||| |||| ||| ||| ||| | ||| Sbjct 629992 AGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCA 629933 Query 72280 CGAATA--TTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 72337 || ||| ||| || ||||| || || || ||||| || ||||| | || || Sbjct 629932 CGGATACGGTGCACGTT--CAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGG 629875 Query 72338 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 72397 || | ||||| ||||| ||||| ||||| || ||| |||| | || | || || Sbjct 629874 TCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAG 629815 Query 72398 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 72457 |||| |||| | || || || || || || | || ||||| || || || || Sbjct 629814 ATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAGA 629755 Query 72458 ATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTC 72517 |||| |||| || ||||| ||||| | || || ||||| || | Sbjct 629754 ATTTGCTGGACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAATAC 629695 Query 72518 CTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCA 72577 | || | |||||||| | ||| |||||||| | || || ||||| | || || | Sbjct 629694 CAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGA 629635 Query 72578 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 72637 | ||| ||| |||||||| || || ||||| || | |||| || || || || | Sbjct 629634 GGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCAT 629575 Query 72638 AAATAAT 72644 | | ||| Sbjct 629574 AGACAAT 629568 >seq1147 Length=1368141 Score = 102 bits (112), Expect = 1e-16 Identities = 547/863 (63%), Gaps = 22/863 (3%) Strand=Plus/Plus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 || ||||| || | ||||| || ||||| || || ||||| || | | || || || Sbjct 1256053 TTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTC 1256112 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGA-AAT 41892 |||||||| || || || ||||| | || |||| || | | |||| || || Sbjct 1256113 TCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGT-TGCCAAGCGCGACAAG 1256171 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952 | | ||| |||| ||| || || || ||||| | ||| | ||||| || | ||| Sbjct 1256172 GAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAG 1256231 Query 41953 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 42012 | ||||||||| |||| || || || || ||||| | ||| || || || || || Sbjct 1256232 GGCACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTAATGAT 1256291 Query 42013 AGATCTTACTGTTTCTTCA-CTCGGTGGAT--ACAATAAATGTTTAAAC--ATCAAACAT 42067 | | ||| || || || | ||| || | | || | | | || Sbjct 1256292 A-----TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGGCAG 1256346 Query 42068 GCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 42127 || || || ||| ||||||||||| | | || | |||||||| || || || ||| Sbjct 1256347 GCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCG 1256406 Query 42128 GGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATT 42187 ||||| || |||||||| || ||||| || ||||| || || | ||| |||||||| Sbjct 1256407 GGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATA 1256466 Query 42188 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGTATC 42244 || || || || || || |||| || | || || | || | | || || ||| Sbjct 1256467 CCCTCAACAGCAGCGAAAGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATC 1256526 Query 42245 CA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 || | || ||||| |||||||||||| | || || || || || ||||| ||||| Sbjct 1256527 CATCGGATG-GCCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAA 1256585 Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363 ||| ||| || | || || | || || || || | || || | || Sbjct 1256586 GAGGTAGGTTCGCTGGGCGGGCTCCTTTATGTAGGTGTCAATGAGCAGGGAGTAGGTCTC 1256645 Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423 || || ||||| || || ||||| || |||||||| || | ||||||| | ||| Sbjct 1256646 GGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTG 1256705 Query 42424 TACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483 || || || ||||| || | | || ||||| || || || ||| || || || Sbjct 1256706 GACCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGACGCAGCGAA 1256765 Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA---ATTTATTCCAATC 42540 || || | | || | || | | || || | || | || ||||| || Sbjct 1256766 GAAAGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTC 1256825 Query 42541 ATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTT 42600 || || ||| || || | ||| | || || | ||||| || || || || ||||| || Sbjct 1256826 ATGGAGATCCTTGGAAAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTT 1256885 Query 42601 ATACATATTCCAGA--TATCATG 42621 ||||| | ||| | ||||||| Sbjct 1256886 GTACATTTGCCAAATCTATCATG 1256908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671112807450960