Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002234195.1_
202017-07-27] 3,146 sequences; 56,132,059 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq2959 190 3e-43
seq1147 102 1e-16
>seq2959
Length=1076507
Score = 190 bits (210), Expect = 3e-43
Identities = 594/907 (65%), Gaps = 22/907 (2%)
Strand=Plus/Minus
Query 71749 ATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 71808
|||||||||||||| || || | |||||| || | || | ||| || |||||
Sbjct 630463 ATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTG 630404
Query 71809 TTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATA 71868
||| || |||||||| || || || || || | || || ||| |||| | || | |
Sbjct 630403 CGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGA 630344
Query 71869 ATCGCTTTCCAGACGACTC-GAGCCTTTATTATATTCTTGTATCTCTT---TTCTCTTTC 71924
|| || | ||| | | || |||||| | ||| ||||| | ||| || | ||
Sbjct 630343 ATGGCGTACCA-AAGTTTCTGAGCCT---TGATAGTCTTGCGACCCTTGCCCTCCTTCTC 630288
Query 71925 GTA--TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCA-TTGTCTAATCCAGGACA 71981
||| || ||| | | | |||||||| ||| || |||| | | | | ||||| ||
Sbjct 630287 GTACTTTTCGTACAGAGCC--TCGAACTCCTCT-CCGTAGCAGTCGGCGAGGCCAGGGCA 630231
Query 71982 TTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGA 72039
|| || || ||||||| | ||| || || | || ||| || || ||||| || |||
Sbjct 630230 CTCGTTGGGGCACATCAGCGTCCAGTCGCCGT--TCTTTTCAACACGCTTCATGAAAAGA 630173
Query 72040 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 72099
||||| |||||||| || | || || || | || | |||||| || || |||
Sbjct 630172 TCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTC 630113
Query 72100 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 72159
|| ||||| |||||| | | | |||||| ||||| || || | ||| ||||| | |
Sbjct 630112 TTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAA 630053
Query 72160 ACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 72219
| || || || ||||| || ||||| || | || | ||| ||||| || | || |
Sbjct 630052 GCACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGA 629993
Query 72220 AACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCA 72279
| ||| |||| || ||| || |||| ||| ||||| |||| ||| ||| ||| | |||
Sbjct 629992 AGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCA 629933
Query 72280 CGAATA--TTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATC 72337
|| ||| ||| || ||||| || || || ||||| || ||||| | || ||
Sbjct 629932 CGGATACGGTGCACGTT--CAGACCAATACCACCAGCCATCTTGGAGATCATGGCACAGG 629875
Query 72338 GTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGC 72397
|| | ||||| ||||| ||||| ||||| || ||| |||| | || | || ||
Sbjct 629874 TCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAG 629815
Query 72398 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 72457
|||| |||| | || || || || || || | || ||||| || || || ||
Sbjct 629814 ATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAGA 629755
Query 72458 ATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTC 72517
|||| |||| || ||||| ||||| | || || ||||| || |
Sbjct 629754 ATTTGCTGGACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAATAC 629695
Query 72518 CTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCA 72577
| || | |||||||| | ||| |||||||| | || || ||||| | || || |
Sbjct 629694 CAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTTGA 629635
Query 72578 ACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 72637
| ||| ||| |||||||| || || ||||| || | |||| || || || || |
Sbjct 629634 GGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCAT 629575
Query 72638 AAATAAT 72644
| | |||
Sbjct 629574 AGACAAT 629568
>seq1147
Length=1368141
Score = 102 bits (112), Expect = 1e-16
Identities = 547/863 (63%), Gaps = 22/863 (3%)
Strand=Plus/Plus
Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833
|| ||||| || | ||||| || ||||| || || ||||| || | | || || ||
Sbjct 1256053 TTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTC 1256112
Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGA-AAT 41892
|||||||| || || || ||||| | || |||| || | | |||| || ||
Sbjct 1256113 TCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGT-TGCCAAGCGCGACAAG 1256171
Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952
| | ||| |||| ||| || || || ||||| | ||| | ||||| || | |||
Sbjct 1256172 GAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAG 1256231
Query 41953 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 42012
| ||||||||| |||| || || || || ||||| | ||| || || || || ||
Sbjct 1256232 GGCACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTAATGAT 1256291
Query 42013 AGATCTTACTGTTTCTTCA-CTCGGTGGAT--ACAATAAATGTTTAAAC--ATCAAACAT 42067
| | ||| || || || | ||| || | | || | | | ||
Sbjct 1256292 A-----TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGGCAG 1256346
Query 42068 GCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 42127
|| || || ||| ||||||||||| | | || | |||||||| || || || |||
Sbjct 1256347 GCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCG 1256406
Query 42128 GGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATT 42187
||||| || |||||||| || ||||| || ||||| || || | ||| ||||||||
Sbjct 1256407 GGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATA 1256466
Query 42188 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATGTATC 42244
|| || || || || || |||| || | || || | || | | || || |||
Sbjct 1256467 CCCTCAACAGCAGCGAAAGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATC 1256526
Query 42245 CA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303
|| | || ||||| |||||||||||| | || || || || || ||||| |||||
Sbjct 1256527 CATCGGATG-GCCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAA 1256585
Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363
||| ||| || | || || | || || || || | || || | ||
Sbjct 1256586 GAGGTAGGTTCGCTGGGCGGGCTCCTTTATGTAGGTGTCAATGAGCAGGGAGTAGGTCTC 1256645
Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423
|| || ||||| || || ||||| || |||||||| || | ||||||| | |||
Sbjct 1256646 GGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGGGGATCTG 1256705
Query 42424 TACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483
|| || || ||||| || | | || ||||| || || || ||| || || ||
Sbjct 1256706 GACCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGACGCAGCGAA 1256765
Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA---ATTTATTCCAATC 42540
|| || | | || | || | | || || | || | || ||||| ||
Sbjct 1256766 GAAAGCAAGGATGTGAGAGACGAAGAACTGCTCATCGGCAGTCAGGCGGTTGTTCCAGTC 1256825
Query 42541 ATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTT 42600
|| || ||| || || | ||| | || || | ||||| || || || || ||||| ||
Sbjct 1256826 ATGGAGATCCTTGGAAAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTT 1256885
Query 42601 ATACATATTCCAGA--TATCATG 42621
||||| | ||| | |||||||
Sbjct 1256886 GTACATTTGCCAAATCTATCATG 1256908
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671112807450960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |