Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002234195.1_ 202017-07-27] 3,146 sequences; 56,132,059 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1147 140 7e-28 seq2959 109 1e-18 seq668 107 4e-18 seq2704 102 2e-16 >seq1147 Length=1368141 Score = 140 bits (154), Expect = 7e-28 Identities = 386/586 (66%), Gaps = 17/586 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| ||||||||||||||||||||| ||| Sbjct 1256077 TCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 1256136 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||| | |||||| || || | || || || || || ||||| | Sbjct 1256137 GCCTTGTAAACCTTCTCGTTGCCAAGCGCGACAAGGAGACGATCAGCGACGAACTCAATG 1256196 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||| || |||||||||||||| | | ||| |||| |||||| || | Sbjct 1256197 TACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGGGCACAGGGAAGAGCCTCAGTGAGG 1256256 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCT---TCACCTG--TGCCAG-- 251795 || |||| || ||| || || || | || ||| ||| ||| ||| | Sbjct 1256257 AACTCCTGCTCAATGGTGACGGCATCAGTAATGATATCCTGGATCATCTGCTTGCTGGCA 1256316 Query 251796 AGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTC 251855 ||| |||| || | |||| ||||| | |||| | ||| |||||||| Sbjct 1256317 CGAC-CCTTG------AGGTGAGAGTGGAGGAGGCAGGCAAAGTCAGTGTGAAGACCCTC 1256369 Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 || ||| ||||| ||||||||| | ||| || ||||| | ||||| ||| |||| Sbjct 1256370 ATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTTCTTGAG 1256429 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAAC 251975 ||||||||| | | |||| ||| ||| | | |||||| ||| | | ||||| Sbjct 1256430 CCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCGAAAGCAAC 1256489 Query 251976 AAGGCGCTCAGCAAACGACTTGTCCTGCGACAAGA-ACTTCTG--TGCCCATGCTGCCTT 252032 || |||| ||||| || ||||| | || | || | ||||| | ||||| Sbjct 1256490 GAGACGCTGGGCAAAGGAGGAGTCCTTATCCTGGATCCATCGGATGGCCCAGTCGGCCTT 1256549 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 ||||| | |||||| || || || || | |||||| || | |||| ||| || Sbjct 1256550 CTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAAGAGGTAGGTTCGCTGGGCGGGCTC 1256609 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATG 252138 || ||| | |||| || || ||||| |||| || |||||| Sbjct 1256610 CTTTATGTAGGTGTCAATGAGCAGGGAGTAGGTCTCGGAGTGGATG 1256655 >seq2959 Length=1076507 Score = 109 bits (120), Expect = 1e-18 Identities = 448/697 (64%), Gaps = 11/697 (2%) Strand=Plus/Minus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174 ||| | |||||| | |||||||| ||||||||||| | | || ||| | ||| Sbjct 631286 CTGGGACTGATCAATGAAGGCACCTCGATCAGCAGCCATCTGAACGACTTGGCGCTGAGA 631227 Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234 ||||||||| ||||| |||| ||||||||||| | | | ||| || ||||| Sbjct 631226 GATCTCCCAAACGGTCTTATACAGAGCCTTGACATCGGCAGGGATGTTGGGAATGTTCTG 631167 Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGAG 293293 || || || | ||||| || |||||||||| | |||||||| || |||| | Sbjct 631166 AATGGAACCATTCTCAGCAATGATGCGGTTCTTCATAGCATCGGACCACAGACCCATG-T 631108 Query 293294 CAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGAC 293353 | | || || || || | | ||||||||| ||||||||||||||||| || | Sbjct 631107 CGACAAGGTCCTTGAGCAGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGTC 631048 Query 293354 GGCTGTAAATGTTCGAAGTGATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCAG 293413 | ||| ||||| || ||| ||| ||| ||| || |||||| | | Sbjct 631047 GTTGGTAGATGTTGGAGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGG 630988 Query 293414 TAGATGCGGTAGGCATAAGAGCAGTCGTCAGAGAGTTCCTCACACCCT---TCTTGACAC 293470 || || ||||||||| ||||| |||| ||| | | || | ||||||| Sbjct 630987 TACTGGCAGTAGGCATAGGAGCAAGGAGCAGACTGTTACGGATGCCGTGTGTCTTGACTT 630928 Query 293471 GCGATTCGAGACCCGCCCAGT-CCAGAGCAGTCTGA-GGTGTAACACCCCAGAGATGATA 293528 | | ||| | |||||| |||||| ||| || || | || ||| | | | Sbjct 630927 CCTCTCGAAGAGTCTCCCAGTCCCAGAG--GTCAGAGGGCTTGACGTTCCACATGTCGAA 630870 Query 293529 CTGCATGATACCCTTGCTGGCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCATC 293588 ||| | |||||||| ||| || || || | ||||||| | ||| || | ||| | Sbjct 630869 CTGGAGGATACCCTCAGAGGCGGGGGAACCTTTGAAGGTGGAGTAGGGACCCTCCTCCTT 630810 Query 293589 AGAGAGCTCGCA-AGATGCCTCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGT 293647 || |||| ||| || || | ||||| ||||||| ||||||||||| || Sbjct 630809 AGCCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGT 630751 Query 293648 TGAGCTTGCGAGCCTGCTCAGAGTCAAACGGCATCTTCAGCTGGAAGAACACATCCTGCA 293707 |||||| ||||||| || || || ||||| ||| | ||| |||| | Sbjct 630750 TGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGGCAA 630691 Query 293708 GACCCTGTACACCTACACCAACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGAA 293767 | ||||| ||||| | ||||| ||| || | ||| |||| || | ||||| | | Sbjct 630690 GGCCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGGA 630631 Query 293768 CCGCATATGCCATCACATCAATGCTCCTGTCCAGGTT 293804 | | || ||||||| ||| || ||| |||||| Sbjct 630630 CAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTT 630594 >seq668 Length=707965 Score = 107 bits (118), Expect = 4e-18 Identities = 159/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || ||||| ||||| || || || |||| |||||||| || ||| Sbjct 394126 GGTGAGGATCTTTGCAACTGTACCTTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAC 394185 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | |||| |||||||||| | || || ||||| ||||||||| || | Sbjct 394186 CAGACTCACCTCCGTCTCAAGCGTGGTCAGCGTTACGGTCTTTGCGGTCCCAACGGTTCC 394245 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| |||||| ||||||||||| |||| ||| | || || || ||||| ||| Sbjct 394246 GGAAAGTCCACTCTCATGCGCGCCATCAACAACGAGCAGGTTGAGGGTTTCCCTAA-GCA 394304 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCC 279566 ||||| | ||| || | || ||||||||| | |||||| Sbjct 394305 GAGCGAGGTCAAGACTGTCTTCGTCGAGCACGACCTTGACTCC 394347 Score = 102 bits (112), Expect = 2e-16 Identities = 168/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 280152 TCTATGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATC 280211 ||| || ||| || |||| ||||| || ||||| ||||| || |||||||| || ||| Sbjct 394933 TCTCTGGGCTCCCGTATTGCCGTCATCGGTCCCAACGGTGCTGGCAAGTCTACTCTGATC 394992 Query 280212 AAAGTCCTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATG 280271 || || || ||||| ||| | ||||| |||| | | |||| ||||| Sbjct 394993 AACGTGCTCACTGGTGAGCTCATCCCCACTCAGGGTGAGATCTACCAGCACGAGAACATC 395052 Query 280272 CGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACT 280331 || || || ||| | |||||||||||| |||||||| ||||| || |||| |||| Sbjct 395053 CGTATCGCCTACATTAAGCAGCACGCTTTCGCTCACATCGATAACCATCTCGACAAGACT 395112 Query 280332 CCTAACCAATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 ||| | | ||||| |||||||| | | || | ||| |||||| ||| | |||| || Sbjct 395113 CCTTCCGAGTACATCCAGTGGCGAT-TCCAGACTGGTGAGGATCGTGAGACCATGGACCG 395171 >seq2704 Length=710760 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 218580 CGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAA 218639 |||| ||||||| ||||||| ||||||||| || | | |||| |||||| | || Sbjct 490638 CGTGCTGGATGGGTTCAAGCCTGGTCAGCGTAAGGTCATATATGCCTGCTTCAAGAGAAA 490579 Query 218640 CCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTA 218699 |||||| |||| | ||||||| | | || |||||||||| || || ||| ||| Sbjct 490578 CCTGGTCAAAGATAAGAAGGTCGTTGAATTGGCTGGTTATGTCTCTGAGCAGACTGCCTA 490519 Query 218700 CCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGG 218759 |||||||||||| ||| ||| || | || | ||| |||| ||| ||| || || Sbjct 490518 CCATCACGGTGAACAGTCTCTCCAACAGACTATCATTGGCCTGGCCCAGAACTTCGTCGG 490459 Query 218760 CAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCT 218810 |||||||| |||| ||| |||| || | || |||||||| || Sbjct 490458 TTCAAACAACATCAACTGTCTGGAACCCAGTGGAAACTTCGGTTCTCGACT 490408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027795369825786