Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002234195.1_
202017-07-27] 3,146 sequences; 56,132,059 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq180 116 9e-21
seq380 102 2e-16
seq1147 96.9 8e-15
seq358 91.5 3e-13
>seq180
Length=389120
Score = 116 bits (128), Expect = 9e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || || || | ||| || || ||||| || ||||||
Sbjct 348158 CCACCACGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 348217
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| |||||||| || || | || || || || ||||| || ||||| || | |||
Sbjct 348218 AGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 348277
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || | || ||||| || || | ||| || || ||
Sbjct 348278 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 348337
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || |||||||||||||| || || ||||||||||| ||||||||
Sbjct 348338 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 348384
>seq380
Length=1607400
Score = 102 bits (112), Expect = 2e-16
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || || |||| || || || || || || || || | |
Sbjct 982475 CCACCACGGAGGCGGAGAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGAG 982416
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| ||||| || | || || || ||||| |||| || || || | ||
Sbjct 982415 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCAGGGGGA 982356
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || ||||| || || | || || || || |||| ||| || || ||
Sbjct 982355 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACC 982296
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
||||| ||||| ||||| ||||||| ||||||||||| |||||||| |||
Sbjct 982295 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATGATG 982245
Score = 102 bits (112), Expect = 2e-16
Identities = 140/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| || || || || ||||||| || || || || || || | ||| || || |||||
Sbjct 982950 TTCCTTCTGAATGTTGTAGTCGGAAAGAGTTCGGCCATCCTCAAGTTGCTTGCCAGCGAA 982891
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGT 288400
||| || ||||||||| || || || || || |||||||| || ||| ||||| |
Sbjct 982890 GATGAGTCGCTGTTGATCGGGAGGAATACCCTCCTTGTCCTGGATCTT-GCTCTTCACAT 982832
Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460
| || || | |||| || || ||||| || || || ||||| || || || |||||||
Sbjct 982831 TATCAATGGTATCGGATGACTCGACTTCCAGAGTAATGGTCTTTCCAGTGAGGGTCTTGA 982772
Query 288461 CGAATATCTGCAT 288473
|||| || |||||
Sbjct 982771 CGAAGATTTGCAT 982759
>seq1147
Length=1368141
Score = 96.9 bits (106), Expect = 8e-15
Identities = 145/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 269119 GAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAAT 269178
|||||| | ||| ||| | || ||| | | |||| ||||| | || ||||||||
Sbjct 1256261 GAGTTCCTCACTGAGGCTCTTCCCTGTGCCCTTCTCGGCATGAACTCTGACCTCATGAAG 1256202
Query 269179 CAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTAC 269238
|| || || || ||||| ||||||||| || | || || || | ||||| || |||
Sbjct 1256201 CAGTACATTGAGTTCGTCGCTGATCGTCTCCTTGTCGCGCTTGGCAACGAGAAGGTTTAC 1256142
Query 269239 AATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTC 269298
|| | | || ||||||| ||| ||||| || || || | || ||||| ||||||
Sbjct 1256141 AAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTC 1256082
Query 269299 TTCGAAAAGCGTGTCAGCGACTATCA 269324
||||| |||||||| |||||| ||
Sbjct 1256081 TTCGAGAAGCGTGTTGCCGACTACCA 1256056
>seq358
Length=929862
Score = 91.5 bits (100), Expect = 3e-13
Identities = 130/182 (71%), Gaps = 6/182 (3%)
Strand=Plus/Minus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| ||||| || ||||||| ||| || || || || || | || || || |||||||||
Sbjct 855848 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 855789
Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| |||||||| || ||| || || || || |||||||| || | || || ||
Sbjct 855788 AGTCGCTGTTG---GTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 855732
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || || || || ||||| ||||| ||||| || ||||| ||||| |||
Sbjct 855731 TCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACG 855672
Query 288463 AA 288464
||
Sbjct 855671 AA 855670
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179606850342988
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |