Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002234195.1_
202017-07-27] 3,146 sequences; 56,132,059 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq1669 242 5e-59
seq3070 93.3 5e-14
>seq1669
Length=665512
Score = 242 bits (268), Expect = 5e-59
Identities = 432/629 (69%), Gaps = 6/629 (1%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||| || |||||||||||||| || || || ||||| | ||||| || ||||||||
Sbjct 374816 TCGAAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTAGACTTGACCTCGAAGATACCC 374757
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| |||||| | | | |||||||| || ||||||||||| || || || ||||| |||
Sbjct 374756 TCCTCAATGGTAAGGAGAGAAACATCGAAGGTACCACCACCAAGATCGAAGATGAGGACG 374697
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
|| ||| | || ||||| || |||||||| || || || || || || || ||
Sbjct 374696 TTGCGCTCGCCCTCGACCTTCTTGTCAAGACCGTAGGCAATGGCGGCAGCAGTAGGCTCG 374637
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
|| || || || ||| ||| || || || || | ||||| || || ||||| ||
Sbjct 374636 TTGATGATTCGGAGAACGTTGAGACCGGCGATGAGACCAGCATCCTTGGTAGCTTGACGC 374577
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| |||||||| |||||||| ||||| || || || |||| |||| ||| |||||
Sbjct 374576 TGAGAATCGTTGAAGTAGGCGGGGACAGTAACAACAGCGTTGTTGACAGTCTCGCCGAGG 374517
Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816
|| || || ||| | || ||| ||||| || | ||| | || ||||| || | |
Sbjct 374516 TAAGACTCGGCGGTCTCACGCATCTTGGTGAGGATCATGGCGGAGATCTCCTCGGGGGTG 374457
Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876
|| || || || || || || ||||| || || |||| ||| || | | |
Sbjct 374456 AAGGTCTTGGTCTCGCCCTTGAACTCAACCTCGATGTTGGGCTTA---CCACCCTTGTCG 374400
Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936
| | ||| | | | | ||||| ||| | ||||||| | || | ||||| |
Sbjct 374399 ACGATCTTGAAGGGGAAGTGCTTCATGTCGGCCTGGACCTCAGGATCGGCGAACTTGCGA 374340
Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996
||||| | ||||| || || || || ||||| | |||||||||||| |||||||||
Sbjct 374339 CCGATCAATCGCTTGGCGTCGAAGACAGTGTTCTGGGGGTTCATGGCGACTTGGTTCTTG 374280
Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056
|| || || || || ||||| || | || || || ||||| | || ||||| |||
Sbjct 374279 GCGGCATCACCAATCAGACGCTC---GGTGTCGGTGAAACCGACGAATGAGGGGGTAGTT 374223
Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTC 8085
|| || || |||||||| || || || ||
Sbjct 374222 CGGTTACCCTGGTCGTTGGCGATGATATC 374194
>seq3070
Length=1118814
Score = 93.3 bits (102), Expect = 5e-14
Identities = 169/244 (69%), Gaps = 5/244 (2%)
Strand=Plus/Plus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
||||||||| |||||||| | || || || || ||||| || ||| || ||||||||
Sbjct 922207 ATCGAAATCCTCACCACCGAGATGGGTGTCACCAGCGGTAGCCAGGACCTCGAAGATACC 922266
Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575
| |||||| | | || ||||| || ||||||||||| || || | || |
Sbjct 922267 GTCATCAATGGAGAGAAGGGAGACATCGAAGGTACCACCACCGAGATCGTA---GACGAT 922323
Query 7576 GTTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634
| || | ||| || | | | |||| || |||||||| |||||||| || || || || |
Sbjct 922324 GATC-TGTCGCTCACCGTCGGTCTTGTCAAGACCGTAGGCGATAGCGGCGGCGGTGGGCT 922382
Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694
| || | || || ||| ||| || || ||||| | | ||||| || || || ||||
Sbjct 922383 CGTTGACGATTCGGAGAACGTTGAGACCGGCAATGATACCGGCATCCTTGGTGGCCTGTC 922442
Query 7695 GTTG 7698
| ||
Sbjct 922443 GCTG 922446
Score = 86.0 bits (94), Expect = 8e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 7704 CGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATT 7763
|||| |||||||| ||||| || ||||| |||| ||||| ||||||||||| || |
Sbjct 922507 CGTTGAAGTAGGCAGGGACGGTGACGACGGCGTGGGTGACCTTCTTACCGAGGTAGCCCT 922566
Query 7764 CCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTT 7823
| |||| || ||||| ||| ||||||||| | || ||||| |||| | ||||| |
Sbjct 922567 CGGCGACCTCCTTCATCTTGCCAAGAACCATAGCAGAGATCTCCTCAGGAGTGAACTGCT 922626
Query 7824 TC 7825
||
Sbjct 922627 TC 922628
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635107823402640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |