Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002234195.1_ 202017-07-27] 3,146 sequences; 56,132,059 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1668 136 5e-27 >seq1668 Length=1082309 Score = 136 bits (150), Expect = 5e-27 Identities = 341/513 (66%), Gaps = 9/513 (2%) Strand=Plus/Plus Query 159273 TGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTA 159332 ||| ||||| || | ||| ||| | | || || ||| | || |||||||||||| Sbjct 365660 TGAGATCACTGGTATGGATGCTACCACTCTTCAGCCCAACTCTGGTGCACAGGGTGAGTT 365719 Query 159333 TGCAGGACTGTTAGCA--ATCCAAGCATACCATCAAGGATCAGGA-GATGATAAAAGAAA 159389 ||| || || | || ||| | || ||||| | ||| || || | ||||| |||| Sbjct 365720 TGCTGGTCT--TCGCTGTATCAAGGCTTACCA-CGAGGCTCGTGATGGAGATAAGCGAAA 365776 Query 159390 TGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGG 159449 || || | || || | || || || || || || ||||| || || | ||||| || Sbjct 365777 GGTCTGCCTTATCCCTGTTTCGGCTCACGGTACCAACCCTGCTTCTGCTGCCATGGCTGG 365836 Query 159450 GATGAAAGTTGTAGGTGTCAAGTGTGATGATGA---TGGCAACATAGACATCAAAGATCT 159506 ||||| ||||| |||||||||||| | | | ||| ||| | || ||| | ||||| Sbjct 365837 TATGAAGGTTGTTACTGTCAAGTGTGACGGTAAGACTGGTAACCTGGATATCGAGGATCT 365896 Query 159507 AGAGAAGAAAGCAATCATGAATACATTTGAACTGTCATGTATTATGATTACATATCCATC 159566 || || ||| | | | ||| || | ||| ||| |||| ||||| || Sbjct 365897 GAAGGCCAAGTGTGTCAAGCACGCTGATGAGCTTGCTGCTATCATGGTTACCTATCCCTC 365956 Query 159567 TACACATGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGG 159626 ||| ||||| || || | | |||| || | ||| | |||| || ||| |||| Sbjct 365957 TACTTTCGGTGTCTTCGAGCCTGAGATCAAGCAAGTCTGTGATCTTGTCCACGAGCATGG 366016 Query 159627 TGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATG 159686 |||| || || | || ||||| || | || || ||| | ||||| | || | Sbjct 366017 CGGTCTCGTCTACATGGACGGTGCCAACATGAACGCCCAGATCGGTCTTTGCAGCCCCGG 366076 Query 159687 TGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGG 159746 |||| |||||| ||||| || ||||| ||| | || ||||| ||||||||||| || || Sbjct 366077 TGACATTGGTGCTGATGTCTGCCATCTCAACCTCCACAAGACCTTCTGTATTCCCCACGG 366136 Query 159747 AGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 || || ||||| || || || ||||| | ||| Sbjct 366137 CGGCGGTGGTCCCGGTGTTGGCCCTATCGCTGT 366169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588028074886560