Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002234195.1_ 202017-07-27] 3,146 sequences; 56,132,059 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq380 96.9 3e-14 seq1669 93.3 3e-13 seq3070 91.5 1e-12 seq202 89.7 4e-12 >seq380 Length=1607400 Score = 96.9 bits (106), Expect = 3e-14 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||| ||||| || |||||||||||| ||| || ||| ||||| || || || |||| Sbjct 982749 GAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCG 982690 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||||| ||||| ||||| ||||| || || | ||||| |||||||| || || || Sbjct 982689 GCCGTCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATACCCTC 982630 Query 563376 TTTATCTTGAATTTTT 563391 ||||||||||| ||| Sbjct 982629 CTTATCTTGAATCTTT 982614 >seq1669 Length=665512 Score = 93.3 bits (102), Expect = 3e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 390901 TTAACTAATTTTCTTTGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATA 390960 ||||| ||| || ||||||||||| || || ||||| || | |||||||| ||| | | Sbjct 94720 TTAACCAATCGTCGCTGGATATAACCTGTTTCGGCAGTCTTGACTGCAGTATCAATGAGA 94779 Query 390961 CCTTCTCTTCCTGCCATAACTTGGAAGAAAAATTCCATAGGATTGAGTCCA 391011 ||||||| || ||||| | |||||||||||||| ||||| |||| ||| Sbjct 94780 CCTTCTCGACCAGCCATGGCGTGGAAGAAAAATTCGCTAGGAGTGAGACCA 94830 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || || || || || || ||||||||||| || |||||||| | || Sbjct 374548 ACTGTCCCCGCCTACTTCAACGATTCTCAGCGTCAAGCTACCAAGGATGCTGGTCTCATC 374607 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || || || || ||||| || || ||||| || ||||||||||| || |||| || || Sbjct 374608 GCCGGTCTCAACGTTCTCCGAATCATCAACGAGCCTACTGCTGCCGCCATTGCCTACGGT 374667 Query 550529 CTTGATAA 550536 ||||| || Sbjct 374668 CTTGACAA 374675 >seq3070 Length=1118814 Score = 91.5 bits (100), Expect = 1e-12 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 550004 GATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATT 550063 ||| | ||||||||||| || ||||| ||||| ||| || || || ||||| ||| | Sbjct 922984 GATCTTGGAACCACATACAGCTGTGTCGGTGTGATGCAGAAGGGCAAGGTTGAGATTCTC 922925 Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACAT 550123 | ||| ||||| |||||| ||| ||||| ||||| || | ||||| || ||| | | Sbjct 922924 GTCAACGATCAGGGTAACCGAATCACTCCCTCTTACGTCGCCTTCACCGAGGATGAGCGT 922865 Query 550124 TTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTAT 550176 || ||||| || || || || | || ||| | | ||| || || || || || Sbjct 922864 TTGGTTGGAGACGCCGCCAAGAACCAGGCCGCCGCTAACCCCACGAACACCAT 922812 >seq202 Length=734607 Score = 89.7 bits (98), Expect = 4e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 720790 CCATCCCTTCCTGCACGACCAATTTCTTGATAATATCCTTCAATATTTTTAGGTGCACCA 720849 ||||| || ||||| || ||| | || |||||||| ||||| | | || || |||| Sbjct 609262 CCATCTCTGCCTGCGCGGCCAGTCTCCTGATAATAGCCTTCCAGGCTCTTTGGAAGACCA 609203 Query 720850 TAATGTATAACTGCTCTCACATCACTTTTATTTATTCCCATTCCAAAAGCAATCGTCGCA 720909 | |||||||| |||||||||| || | || ||||||||||| || || || ||| Sbjct 609202 TGGTGTATAACGAATCTCACATCAGGCTTGTCAATACCCATTCCAAATGCGATTGTAGCA 609143 Query 720910 ACCATAACTTTAAc 720923 |||| ||||||||| Sbjct 609142 ACCACAACTTTAAC 609129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029129625331540