Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002234195.1_ 202017-07-27] 3,146 sequences; 56,132,059 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2959 343 3e-89 seq1147 199 7e-46 >seq2959 Length=1076507 Score = 343 bits (380), Expect = 3e-89 Identities = 1153/1767 (65%), Gaps = 102/1767 (6%) Strand=Plus/Minus Query 212553 ACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTT 212612 || || ||||| | ||| |||||||||||| || || || ||||||||||| || || Sbjct 631423 ACAGTGAACTGAATAGGAGCAGCAGCAGCCTGTGTACGAAGGTAGTACATGCCAGTTTTG 631364 Query 212613 AGGCC---CTTGCCCCAGCCGTGCAT-GTGCATTGCTGTGAGTTTCTTCAGCTTAATATT 212668 ||||| ||| |||||| |||| |||||| |||| |||| | || | Sbjct 631363 AGGCCAAGCTT---CCAGCC-TGCAAAGTGCATACTGGTGA---TCTTGCCC---ATCGT 631314 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 |||| | | |||| | |||||| ||||| ||| || ||||| | | Sbjct 631313 GGGGTCCTTCATGTGG---------ATGTTCAGTGACTGGGACTGATCAATGAAGGCACC 631263 Query 212729 CCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGAT 212788 | ||||| ||||| | | || | | ||| |||| |||||| |||||||| | | Sbjct 631262 TCGATCAGCAGCCATCTGAACGACTTGGCGCTGAGAGATCTCCCAAACGGTCTTATACAG 631203 Query 212789 TTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAG 212848 | |||| || | |||| | ||| |||||||| | || || || |||| Sbjct 631202 AGCCTTGACATCGGCAGGGATGTTGGGAATGTTCTGAATGGAACC-------ATTCTCAG 631150 Query 212849 C--TGCAGGCG------CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACC 212900 | || | ||| ||| | ||| ||| || ||| || | ||| ||||| | Sbjct 631149 CAATG-ATGCGGTTCTTCATAGCATCGGACCACAGACCCATGTCGACAAGGTCCTTGAGC 631091 Query 212901 AGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAA 212960 || |||||||| | |||||| ||||| | ||| || | | ||||| | ||| || Sbjct 631090 AGCCAGGGGTTGACAACCTGGAACTCACCAGCGAGAACACGTCGTTGGTAGATGTTGGAG 631031 Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||||||||||| || ||||||||| ||||||||||| | || ||||| || ||||| Sbjct 631030 GTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGGGAGGTACTGGCAGTAGGCATA 630971 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGC---CGAAGC-TC 213076 ||||| | || |||||||| | | ||||| | | ||| | ||||| || Sbjct 630970 GGAGCAAGGAGCAGACTGTTACGGATGCCGTGT--GTCT-TGACTTCCTCTCGAAGAGTC 630914 Query 213077 TGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAA 213136 | |||||||||| | |||| | ||| |||||||||||||| ||||| | Sbjct 630913 T-CCCAGTCCCAGAGGTCAGAGGG---------CTTGACGTTCCACATGTCGAACTGGAG 630864 Query 213137 GATGCCTTTGCTCA----CGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGG 213192 ||| || |||| ||||| || | | | | ||||||||| || | |||||| | Sbjct 630863 GATACC----CTCAGAGGCGGGGGAACCTTTGAAGGTGGAGTAGGGACCCTCCTCCTTAG 630808 Query 213193 CCAGCTCGCA-GGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTG 213251 |||||| ||| ||| || |||||||||| ||| ||||| || || |||| | ||||| Sbjct 630807 CCAGCT-GCACGGAGGCAGTGAGGGCAGCGTGGTAAATGGTCTCGAAGATCTGCTTGTTG 630749 Query 213252 AGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGC 213311 |||| ||||| || ||| ||||||||| || |||| |||| || || Sbjct 630748 AGCTCACGAGCCTCGGGTGACTCGAAGGGCATGCGCAGAGCAAGGAAAGCATCGGCAAGG 630689 Query 213312 CCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAA 213370 ||||| || || | || ||||||| ||| | || |||| ||| |||| ||||| | Sbjct 630688 CCCTGAACACCAAGACCAATGGGTCGGTGGCGCATGTTACTGTTGCGAGC-CTCCTGGAC 630630 Query 213371 GGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATG 213430 ||||| ||| |||||||||||||| ||||| || | | || | |||| | Sbjct 630629 AGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTACGAATAACAACCTGACTGACCTT 630570 Query 213431 GGCCAGGTACTCGTGATTGAACACGTAGC------CCCCGTCCTGCACAAACTCAGGCAG 213484 | || || | ||||| |||||| | ||| | | || ||||| Sbjct 630569 GTGCA---AC---TTCTTGAAGTCGTAGCAAGCCTCATCGTAGTTGATGAAAGAGGGCAG 630516 Query 213485 GGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTC 213544 || | ||| |||||||| || || ||||| | || | | |||||| || || || Sbjct 630515 AGCCAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGGGCACAGTACTCAATAATTTC 630456 Query 213545 GGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGC 213604 |||||||||||| || ||||||||| || ||||||| ||| ||| ||||| | || Sbjct 630455 AGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGG-TTGCTCTTGCGGTTGC 630397 Query 213605 A-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC 213663 | | |||||||||||||||| | ||| |||||||| ||||| | | || || | Sbjct 630396 AGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGT 630337 Query 213664 TCCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTT 213723 ||| || | | ||||||| | | ||| | | | | |||||||| || Sbjct 630336 ACCAAAGTTTCTGAGCCTTGA-TAGTCTTGCGACCCTTGCCCTCCT--TCTCGTACTTTT 630280 Query 213724 CGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGAC 213783 |||| || | | ||| || | || || | | || || || || ||| | Sbjct 630279 CGTACAGAGCCTCGAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGC 630220 Query 213784 ACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACA 213843 |||| || ||||||| |||| | | || | || |||||| || || |||| ||| | Sbjct 630219 ACATCAGCGTCCAGTCGCCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAA 630160 Query 213844 GCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTA 213903 | ||| ||| ||||| | || | ||| || || ||| || || ||||| | Sbjct 630159 GGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGTTCTTACGGAGATCAA 630100 Query 213904 GAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG---GCC 213960 | || || |||| || | |||||| ||||| | |||||||||||| || || | || Sbjct 630099 GGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCT 630040 Query 213961 TCTTGCCGCCCTGGTCCACCAGCCTGGCCACCA----TGTTGAAGATGCGCAGGACGGGT 214016 | ||||| |||||||| | | | || | || ||||||||| || || | || Sbjct 630039 TGTTGCCACCCTGGTCGA----CATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGA 629984 Query 214017 ACCAGCCCGTTGGACTGT-CCGTTGGTTCCCGCTATATACGAGCCGGAGGCCC--TCAGG 214073 || | ||||| || ||| |||||||| || || || || ||||| | || | | | Sbjct 629983 ACAACACCGTTCGA-TGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACG 629925 Query 214074 TTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACA 214133 ||| | | ||| || || ||||| || ||||||||||||||| ||| | | | | Sbjct 629924 GTGCACGTTCAGA--CCAATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGA 629867 Query 214134 GTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGC 214193 || || ||| || | || ||||| || | | | | ||||||||| || | Sbjct 629866 GTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAAT 629807 Query 214194 TGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTA 214253 |||||| | | ||| | |||||| |||||||| |||||| | | || ||| | Sbjct 629806 TGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAAGAATTTGCTG 629747 Query 214254 GAGAGGAGCCTGTAGGTCTCCAGGACT 214280 || | || |||| ||||||| |||| Sbjct 629746 GACATCAGGTTGTATGTCTCCAAGACT 629720 >seq1147 Length=1368141 Score = 199 bits (220), Expect = 7e-46 Identities = 493/738 (67%), Gaps = 29/738 (4%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| | || | ||||| |||||||| ||||| || | | ||||||||||| Sbjct 1256055 CTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTC 1256114 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| ||||||||||| | || || ||| | || ||| | | | || | Sbjct 1256115 CATGAAGTCGAAGGGGTTGGTGGCCTTGTAAACCT-TCTCGTTGCCAAGCGCGACAAGGA 1256173 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | |||| |||||| |||| ||||| | ||||||| ||||||||| | |||| Sbjct 1256174 GACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGAGAAGGG 1256233 Query 48018 ACACGGGCAA-AGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 ||| || || ||||| ||||| ||||||| ||| || ||||| || | || Sbjct 1256234 -CACAGGGAAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCAGTAATGATA 1256292 Query 48077 TGCTTAACGCGGGAC-TCTGAGGGTTTGTTGCGCAGGTGC-TTG------GCATAGAGCA 48128 | || || | |||| ||| || ||| | | ||| | | ||| | Sbjct 1256293 TCCT------GGATCATCTGC----TTGCTG-GCACGACCCTTGAGGTGAGAGTGGAGGA 1256341 Query 48129 TGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGA 48188 |||||||||||| |||| | || || || || ||||||| ||||||||||| | Sbjct 1256342 GGCAGGCAAAGTCAGTGTGAAGACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCA 1256401 Query 48189 GACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGA 48248 |||| ||||||| || | || ||||||||||| || | ||||| | ||| ||||| Sbjct 1256402 GACCGGGCATGAGACCACGCTTCTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGA 1256461 Query 48249 AGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG 48308 |||| ||||| || || ||||| || ||| | || | || || | || ||| || Sbjct 1256462 AGATACCCTCAACAGCAGCGAAAGCAACGAGACGCTGGGCAAAGGAGGAGTCCTTATCCT 1256521 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 |||||| | |||||||| |||||||| |||||| || || ||||| ||||| Sbjct 1256522 GGATCCATCGGATGGCCCAGTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGT 1256581 Query 48369 GGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGT 48425 ||||| | | | || | | ||| | ||||| | ||||||| | || Sbjct 1256582 TAAAGAGGTAGGTTCGCTGGGCGGGCTCCTTTATGTAGGTGTCAATGAGCAG---GGAGT 1256638 Query 48426 ACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAA 48485 | |||| ||||| | ||||| || ||||||||| ||||||||| | ||||| Sbjct 1256639 AGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCGG 1256698 Query 48486 ACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAG 48545 | ||| || || ||||| ||| | || ||||| ||||| || ||||| || | Sbjct 1256699 GGATCTGGACCTCGCCACTGAATCGCTCGACGAGGTTCTCGTTGACAATACCATCAGACG 1256758 Query 48546 CAGCAAAGAAGGCAAGGA 48563 |||| ||||| ||||||| Sbjct 1256759 CAGCGAAGAAAGCAAGGA 1256776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931496167472640