Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002234195.1_
202017-07-27] 3,146 sequences; 56,132,059 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq380 120 2e-21
>seq380
Length=1607400
Score = 120 bits (132), Expect = 2e-21
Identities = 160/220 (73%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||||||||| || | || || ||| ||| || || || || || | |||||
Sbjct 982980 ACGAAGACGGAGAACCAAGTGGAGAGTAGATTCCTTCTGAATGTTGTAGTCGGAAAGAGT 982921
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|| | ||| ||||||||||| ||||| || || || || |||||||| |||||||| ||
Sbjct 982920 TCGGCCATCCTCAAGTTGCTTGCCAGCGAAGATGAGTCGCTGTTGATCGGGAGGAATACC 982861
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||||| || ||||| || ||| ||||| ||||| | || | | ||| |
Sbjct 982860 CTCCTTGTCCTGGATCTTGCTCTTCACATTATCAATGGTATCGGATGACTCGA-CTTCCA 982802
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| ||||| || || || ||||| ||||| ||||| |||||
Sbjct 982801 GAGTAATGGTCTTTCCAGTGAGGGTCTTGACGAAGATTTG 982762
Score = 107 bits (118), Expect = 1e-17
Identities = 153/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| || ||||| || |||||||| ||| ||| || || || || || || || ||
Sbjct 982752 ACGGAGGCGGAGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGT 982693
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|| | ||||| ||||||||||||||||| || || || || || |||||||| || ||
Sbjct 982692 TCGGCCGTCTTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATACC 982633
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
||||| |||||||||||| || ||| || || ||||| | | | | ||||
Sbjct 982632 CTCCTTATCTTGAATCTTTGACTTAACATTGTCGATGGTATCGGACGACTCGA-CCTCAA 982574
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762
| || || || || || ||||| ||||| ||||
Sbjct 982573 GAGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 982541
Score = 96.9 bits (106), Expect = 2e-14
Identities = 113/153 (74%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
|||||| | ||||| ||||| || |||||||| || |||||||| ||||| || |||||
Sbjct 983142 ATCTTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATACCCTCCTT 983083
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736
||| |||||||| || || || ||||| ||| || |||||||| ||
Sbjct 983082 GTCCTGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGAT 983023
Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || |||||||||||||| || ||||| ||
Sbjct 983022 GGTCTTTCCGGTGAGAGTCTTCACAAAAATCTG 982990
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268044252795608
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |