Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002234195.1_ 202017-07-27] 3,146 sequences; 56,132,059 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2959 179 1e-39 seq1147 149 2e-30 seq558 104 7e-17 seq1669 93.3 1e-13 >seq2959 Length=1076507 Score = 179 bits (198), Expect = 1e-39 Identities = 573/879 (65%), Gaps = 15/879 (2%) Strand=Plus/Minus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || | ||| ||| ||||||||| || || |||||| || | ||||| ||||| Sbjct 630470 GTACTCAATAATTTCAGTGCACAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTT 630411 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| || ||||||||||| || ||| ||||| |||| ||||| |||| || Sbjct 630410 GCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGC 630351 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || ||||| ||| || | | || || || |||| |||| ||| Sbjct 630350 CTCAAGAATGGCGTACCAAAGTTTCTGAGCCTTGATAGTCTTGCGACCCTTGCCCTCCTT 630291 Query 155810 CTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867 ||| || |||| || | ||| | | | ||||| ||||| || || || |||||| Sbjct 630290 CTCGTACTTTTCGTACAGAGCCTC--GAACTCCTCTCCGTAGCAGTCGGCGAGGCCAGGG 630233 Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATA 155925 |||| | |||||| | ||||| ||| || | || ||||||| ||| || | Sbjct 630232 CACTCGTTGGGGCACATCAGCGTCCAGTCGCCGTT--CTTTTCAACACGCTTCATGAAAA 630175 Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGAT 155985 |||| ||||| || ||||||||| | || |||||| | ||||| | Sbjct 630174 GATCAGGGATCCAAAGGGCGAGGAAAAGGTCACGGGCACGGACCTCCTCTTTACCGTGGT 630115 Query 155986 TCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAA 156045 |||| || || || | ||| || | ||||| || ||||| || || || |||| Sbjct 630114 TCTTACGGAGATCAAGGAACTCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAA 630055 Query 156046 AACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 || ||| | |||| |||||||| || ||||| |||||||| || |||||||||| Sbjct 630054 AAGCACCGGGTCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGAAGACAC 629995 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162 |||||||||| || ||| || || || || ||||| ||| || | || |||| | Sbjct 629994 GAAGCATAGGAACAACACCGTTCGATGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAG 629935 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCAT 156221 || | | || | | || ||||||||||| | |||| || || || || || Sbjct 629934 CACGGATACGGTGCACGTTCAGACCAATACCACCAG-CCATCTTGGAGATCATGGCACAG 629876 Query 156222 TCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT-TGATAGTAGATAGCA 156280 ||| | ||||| | | || || |||||| || || | ||| | | ||| |||| Sbjct 629875 GTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGA-AGCA 629817 Query 156281 CGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAA 156340 || ||||| || | || || || |||||||| || || || | ||||| | || Sbjct 629816 AGATGACAATTGGGGCTGAGGGGTGCCGGCGTTGAAGAGCGTGGGAGAGGCATGTGTGAA 629757 Query 156341 ATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAAT 156400 | || | ||||| | |||||||||| | ||| | || | || ||| Sbjct 629756 GAATTTGCTGGACATCAGGTTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAAAT 629697 Query 156401 ACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCG 156460 || | ||| || | ||| ||| |||||||| ||||| |||||| || ||||| Sbjct 629696 ACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGACAATCTTACCGTCAATCTT 629637 Query 156461 CAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 || ||||||| || |||| ||| || || || || || Sbjct 629636 GAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 629598 >seq1147 Length=1368141 Score = 149 bits (164), Expect = 2e-30 Identities = 466/717 (65%), Gaps = 6/717 (1%) Strand=Plus/Minus Query 133232 GCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGA 133291 || || || |||||| |||||||||||| || || | | || || | || Sbjct 1256771 GCTTTCTTCGCTGCGTCTGATGGTATTGTCAACGAGAACCTCGTCGAGCGATTCAGTGGC 1256712 Query 133292 GAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATC 133351 || || || | |||| || ||| ||| || || | ||||| |||||| || ||| Sbjct 1256711 GAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACATC 1256652 Query 133352 CATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCAC 133411 || || || || || || ||||| || ||||| || || ||| |||| | Sbjct 1256651 CACTCCGAGACCTACTCCCTGCTCATTGACACCTACATAAAGGAGCCCGCCCAGCGAACC 1256592 Query 133412 AAACTATTCAACGCCATTAGCGAATTTCCT-TGTATTAAAAAGAAATCTGACTGGGCTAT 133470 | || || ||||||||| | || ||| || || |||||| | |||||||| || Sbjct 1256591 TACCTCTTTAACGCCATT-GAGACCATCCCCTGCATCCGAAAGAAGGCCGACTGGGCCAT 1256533 Query 133471 TAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGT 133530 |||||||||||| ||| | ||||| |||||||||||||| |||| || Sbjct 1256532 CCGATGGATCCAGGATAAGGACTCCTCCTTTGCCCAGCGTCTCGTTGCTTTCGCTGCTGT 1256473 Query 133531 AGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTAT 133590 ||||| || || ||||||||||| ||| |||||| || ||||| || ||||||||| | Sbjct 1256472 TGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCTCAAGAAGCGTGGTCT 1256413 Query 133591 TCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGA 133650 | || || ||| || || ||||| || || || | || |||| |||||||| || Sbjct 1256412 CATGCCCGGTCTGACCTTCTCCAACGAGCTCATCTCTCGTGATGAGGGTCTTCACACTGA 1256353 Query 133651 ATTTGCCGTTTTACTTCACTCTAAATTAGAGCGACCACTCAAAAAGAATAAGATTGAAGA 133710 |||||| | || |||||| | | || | | || ||| | | ||| | || Sbjct 1256352 CTTTGCCTGCCTCCTCCACTCTCACCTCAAGGGTCGTGCCAGCAAGCAGATGATCCAGGA 1256293 Query 133711 AATTATTAGAGAAGCGGTTGAAATTGAGGTTGAATTTATCAATAGTGCTCTGCC--GTGC 133768 || |||| || || || |||||| || || ||| | ||||| || |||| Sbjct 1256292 TATCATTACTGATGCCGTCACCATTGAGCAGGAGTTCCTCACTGAGGCTCTTCCCTGTGC 1256233 Query 133769 CGTTTAATTGGTATGAATGATGTGCTGATGCAGCGTTATATTGAATTTGTAGCTGACAGA 133828 | || | || ||||| || || ||| ||| || ||||| || || ||||| | Sbjct 1256232 CCTT--CTCGGCATGAACTCTGACCTCATGAAGCAGTACATTGAGTTCGTCGCTGATCGT 1256175 Query 133829 TTGGCCGTTCAGTTAGGTGGGGATAAGATTTACGGTTCCGCCAATCCATTCGACTGGATG 133888 | || | | || || ||| ||||| || |||| || ||||||| ||| Sbjct 1256174 CTCCTTGTCGCGCTTGGCAACGAGAAGGTTTACAAGGCCACCAACCCCTTCGACTTCATG 1256115 Query 133889 GAGAGCATTAGCATTGAATCAAAGACTAATTTCTTCGAGGCGAGGGTAGCCGAATAC 133945 |||| ||| | ||| ||||| || ||||||||| | | || ||||| ||| Sbjct 1256114 GAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGCCGACTAC 1256058 >seq558 Length=1010043 Score = 104 bits (114), Expect = 7e-17 Identities = 387/598 (65%), Gaps = 34/598 (6%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | || || ||||| | | ||||||| || | ||| | || || Sbjct 933520 ATGAGTCCACAAATCTCGCAGACGTGGACACGGAAAGCATCCGACACCTCAAACAGACGC 933461 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| || |||||||| | |||||||||||||| |||||||| ||||| Sbjct 933460 TCCTTCAGGAAAGCAGCGGCACCGTGAGCGATCATACAATCACGTTCCATTTCTCCGAAT 933401 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586 || ||||||||||| ||||| | ||||||| |||| || || || | | | | ||| Sbjct 933400 CGGAGACCACCATCACGAGCACGACCCTCGACAGGTTGTCGGGTCATAATCTGAACTGGA 933341 Query 251587 CC----GATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 || | ||||| || ||| || | ||||| || |||||||||||| | Sbjct 933340 CCACGAGCACGAGCG----TGAATCTTGTCGTCCACCATGTGACGAAGACGCTGGTAGTA 933285 Query 251643 TGCGGGACCGATGAAGA----TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACA 251698 | || |||| ||| | || || | || || | |||||| || |||| |||| Sbjct 933284 GGTAGGTCCGAAGAACACCTGGGCACGGA-GCTTTCG---TCCAGTGTGACCGTTGTACA 933229 Query 251699 TAACTTCGTTTCCATTAGATTCATAACCAAGTTTCTGTAGCTCTGAAGCAATATCAC-CA 251757 | || ||| || ||||| ||||| | ||| ||| |||| | || | Sbjct 933228 TGACCTCGAAACCTCGAGATTGGTAACCGTGCTTC-----CTCAGAAGTTCTGAGACTGA 933174 Query 251758 ATCTTGAATTTGCTAAAACTG------GTGCCGTCTCCGTAAAGACCCATTTGAATCAAC 251811 ||| || | || | | || ||| |||| || | | ||| | | | Sbjct 933173 ATC--GACTGTGACATCAGTGAACGGTGTGGCGTCACCCTCCATACCTTCCAGCGTTGAA 933116 Query 251812 ACTTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGG 251871 || |||| | ||| ||| ||| ||||| || ||||| || ||||| || || Sbjct 933115 ACCTTGCTAAGAAGACACTCAATCAAATGGGCAATTGTCATTCGCGATGGAATGGCGTGA 933056 Query 251872 GGATTGATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCA 251931 || ||||| ||||| ||||| | || || || |||| |||||||||| | || Sbjct 933055 GGGTTGATAATGATATCGGGAGTAAGACCTTCTCGGCTGAAAGGCATATCCTCCT-GTCG 932997 Query 251932 ATAATGT--TTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 || |||| || || || |||||||| ||||||||||| ||||| |||||||| Sbjct 932996 AT-ATGTAACACCGATTGTACCCTTTTGACCGTGACGAGACGCAAACTTGTCACCAAT 932940 Score = 86.0 bits (94), Expect = 2e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||||||||| ||||||||||||||||||||||| || | || |||||||||||| Sbjct 933442 GCACCGTGAGCGATCATACAATCACGTTCCATTTCTCCGAATCGGAGACCACCATCACGA 933383 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTA-AAACAGTTCTTGGACCCTGAGCACGATAATT 233391 | | ||||| ||| | ||| || || | || | | | |||||| |||||||| | Sbjct 933382 GCACGACCCTCGACAGGTTGTCGGGTCATAATCTGAAC-TGGACCACGAGCACGAGCGTG 933324 Query 233392 AATTTTATCTTTAACCATATG 233412 ||| || || | ||||| || Sbjct 933323 AATCTTGTCGTCCACCATGTG 933303 >seq1669 Length=665512 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || |||||| | || ||||| |||||||| |||||||| Sbjct 93931 AGAATTTCCTTGAGACGTGGCACACCAAGAGTAACGTT---CTTGGACGACACACCAGCG 93987 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||| || ||||| || | ||||||| |||||||||||| || || || | Sbjct 93988 AAATGGAAGGTGTTCAGTGTCATCTGAGTAGCAGGCTCACCAATAGACTGCGCAGCCAGA 94047 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 94048 ACACCAACCATTTCACCAGG 94067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471758273792202