Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002234195.1_ 202017-07-27] 3,146 sequences; 56,132,059 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2959 132 6e-25 seq1824 132 6e-25 seq1147 114 2e-19 >seq2959 Length=1076507 Score = 132 bits (146), Expect = 6e-25 Identities = 184/258 (71%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||| ||||| || |||| ||| ||||| || ||||| || || | ||||| || Sbjct 630029 CTGGTCGACATAGCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCGTTCGA 629970 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||||| || || | ||||| ||| | || || | |||| || | || Sbjct 629969 TGTACCGTTGGTACCGGCGATGTAGGAGCCAGTAGCACGGATACGGTGCACGTTCAGACC 629910 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || || ||| ||||||||| | || || ||||| || |||||||| ||||| Sbjct 629909 AATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 629850 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || |||| ||||||| || || | ||||| || || ||| || || | ||||| Sbjct 629849 AATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCC 629790 Query 1630305 GGCGTTGAAGAGCGTGGG 1630322 |||||||||||||||||| Sbjct 629789 GGCGTTGAAGAGCGTGGG 629772 >seq1824 Length=301714 Score = 132 bits (146), Expect = 6e-25 Identities = 96/111 (86%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 ||||||||||||||||||||||||| || ||| | || |||||| |||| || ||||||| Sbjct 196859 CCAACTACCTCGACATCAAGCCTCTTCTTGATGTCGGCTGCAAGACTGTTGCAAACATGA 196800 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||| ||||| |||||||||||||| || ||||| | | ||| Sbjct 196799 TCAAGGGCAAGTCTCCCGAAGAGATCCGCAAGACTTTCAACATTACGAACG 196749 >seq1147 Length=1368141 Score = 114 bits (126), Expect = 2e-19 Identities = 200/286 (70%), Gaps = 5/286 (2%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| || || ||| ||| | |||||| |||| || ||||||||||| || ||||| Sbjct 1256364 ACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTCAGACCGGGCATGAGACCACGCTT 1256423 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||| | | ||| || ||| ||||| ||||| || || || || Sbjct 1256424 CTTGAGCCAGAAGATAGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGCAGCGAA 1256483 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 | | ||| |||| |||||||| | || | ||| | | |||||| || ||||| Sbjct 1256484 AGCAACGAGACGCTGGGCAAAGGAG--GA-GTCCTTATCCTGGATCCATCGGATGGCCCA 1256540 Query 869359 GTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTTT 869417 ||||||||| || | | | || | || || |||||| |||||||| ||| | | Sbjct 1256541 GTCGGCCTTCTTTCGGATGCAGGGGATGGTCTCAATGGCGTTAAAGAGGTAGGTTC-GCT 1256599 Query 869418 CGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 ||| || ||||| | |||||||| || || || || |||||||| Sbjct 1256600 GGGCGGGCTCCTTTATGTAGGTGTCAATGAGCAGGGAGTAGGTCTC 1256645 Score = 96.9 bits (106), Expect = 4e-14 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| | || ||| |||||| |||||||||||||| | || ||||| Sbjct 1256050 GCCTTCTGGTAGTCGGCAACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATG 1256109 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | |||||| ||| ||| || |||| | Sbjct 1256110 TTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAAACCTTCTCGTTGCCAAGCGCGACA 1256169 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 || || || || ||||| ||||| |||||||| ||||||| | | ||||||||||| Sbjct 1256170 AGGAGACGATCAGCGACGAACTCAATGTACTGCTTCATGAGGTCAGAGTTCATGCCGA 1256227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106881024507282