Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002234195.1_
202017-07-27] 3,146 sequences; 56,132,059 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq180 125 5e-24
seq380 122 6e-23
seq358 98.7 6e-16
>seq180
Length=389120
Score = 125 bits (138), Expect = 5e-24
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||||||| | |||| ||||||||| ||||| ||||| ||| |||| ||||
Sbjct 348173 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGTCCATCC 348232
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| || || ||||| ||||| |||||||| | || | |||||||||||
Sbjct 348233 TCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 348292
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || |||||| | || | || | ||| || |||| ||| || |||
Sbjct 348293 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 348352
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| |||||||||||||| || || ||||||||
Sbjct 348353 TTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 348384
>seq380
Length=1607400
Score = 122 bits (134), Expect = 6e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| || ||||||| || ||||||||| ||||| ||||| | | |||| ||||
Sbjct 983198 AGAACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGCTCAAGGTGCGACCATCT 983139
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|||| ||||| || |||||||| || || ||||| || | || | |||||||||||
Sbjct 983138 TCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGATCAGGGGGAATACCCTCCTTGTCC 983079
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || || ||| | || | ||| ||| |||||| |||| ||| ||||||
Sbjct 983078 TGAATCTTGCTCTTCACGTTGTCGATAGTGTCACTGGACTCGACCTCAAGGGTGATGGTC 983019
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| ||||| ||||| ||||| ||||||||
Sbjct 983018 TTTCCGGTGAGAGTCTTCACAAAAATCTGCAT 982987
Score = 109 bits (120), Expect = 4e-19
Identities = 157/219 (72%), Gaps = 8/219 (4%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| || ||||||| || ||||||||||||||| || || || || |||| | ||
Sbjct 982460 AGAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCGTCC 982401
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| |||||||| |||| ||||||||||| | || | |||||||||||
Sbjct 982400 TCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCAGGGGGAATGCCCTCCTTGTCC 982341
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || || ||||| || | ||||| || | ||| || || | ||| ||
Sbjct 982340 TGAATCTTGGACTTGAC--AT--TGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGAT 982285
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980
|||||| || || | |||||| || ||||||||||||||
Sbjct 982284 GGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATGAT 982246
Score = 100 bits (110), Expect = 2e-16
Identities = 146/204 (72%), Gaps = 8/204 (4%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| || |||| ||| |||||||||||||| ||||| | ||| | || | ||
Sbjct 982742 AGGACGAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCGGCAAGGGTTCGGCCGTCT 982683
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| ||||||||||| || |||||||| || |||||||| | || | |||||||| ||
Sbjct 982682 TCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGGATACCCTCCTTATCT 982623
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941
| || ||| || || || | ||||| || | |||||| |||| || ||
Sbjct 982622 TGAATCTTTGACTTAAC--AT--TGTCGATGGTATCGGACGACTCGACCTCAAGAGTGAT 982567
Query 34942 GGTCTTTCCCGTGAGGGTCTTTAC 34965
|||||| || ||||||||||| ||
Sbjct 982566 GGTCTTGCCAGTGAGGGTCTTGAC 982543
>seq358
Length=929862
Score = 98.7 bits (108), Expect = 6e-16
Identities = 134/185 (72%), Gaps = 8/185 (4%)
Strand=Plus/Minus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||| ||||| ||||| || || | || |||| || || ||||| || |||||||
Sbjct 855850 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 855791
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
||||||| || ||||| | || | ||||||||||| | || || ||||| ||
Sbjct 855790 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT- 855734
Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| ||||| || || |||||| || | ||| |||||||| ||||| ||||||||
Sbjct 855733 -TGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTC 855675
Query 34964 ACAAA 34968
|| ||
Sbjct 855674 ACGAA 855670
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325680312327374
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |