Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20oxysporum_20f._20gladioli_20[genbank_20GCA_5F002234195.1_ 202017-07-27] 3,146 sequences; 56,132,059 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1147 181 2e-39 seq2959 118 2e-20 >seq1147 Length=1368141 Score = 181 bits (200), Expect = 2e-39 Identities = 353/507 (70%), Gaps = 12/507 (2%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||||| ||||| ||||| ||||| || |||||| | || | Sbjct 1256901 GATTTGGCAAATGTAC-AAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATC 1256843 Query 1455835 TCGGCGCCGA-CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATC 1455890 | | || | | | ||||| ||| ||| | ||| |||| ||| || Sbjct 1256842 TTTCCAAGGATCTCCATG-ACTGGAACAACCGCCTGACTGCCGATGAGCAGTTCTTCGTC 1256784 Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGG 1455950 ||| |||| || ||| ||||| || ||||| || || ||||||||| | || Sbjct 1256783 TCTCACATCCTTGC-TTTCTTCGCTGCGTCTGATGGTATTGTCAACGAGAACCTCGTCGA 1256725 Query 1455951 CCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010 || || | |||||||| | || ||||| |||| || ||||| ||||||||| Sbjct 1256724 GCGATTCAGTGGCGAGGTCCAGATCCCCGAGGCTCGTTGCTTCTACGGCTTCCAGATCAT 1256665 Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || || ||||||||||| || |||||||| || || || ||||||||| | ||||| || Sbjct 1256664 GATGGAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTACATAAAGGAGCC 1256605 Query 1456071 GGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGG 1456129 | | || | ||| |||||||| |||||| || || | || | | | || |||| Sbjct 1256604 CGCCCAGC-GAACCTACCTCTTTAACGCCATTGAGACCATCCCCTGCATCCGAAAGAAGG 1256546 Query 1456130 CCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGT 1456189 |||||||||| || |||||| | | | || ||| | ||||||| |||| ||||| Sbjct 1256545 CCGACTGGGCCATCCGATGGATCCAGGA-TAAGGACTCCTC-CTTTGCCCAGCGTCTCGT 1256488 Query 1456190 CGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCT 1456248 | || || || || ||||| ||||| ||| || ||| | | ||||| ||||| Sbjct 1256487 TGCTTTCGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCTATCTTCTGGCT 1256428 Query 1456249 CAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||| || |||||||||||||| Sbjct 1256427 CAAGAAGCGTGGTCTCATGCCCGGTCT 1256401 >seq2959 Length=1076507 Score = 118 bits (130), Expect = 2e-20 Identities = 181/258 (70%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 ||||||||||| || |||||||| || | || || || || ||||| || | || Sbjct 629772 CCCACGCTCTTCAACGCCGGCACCCCTCAGCCCCAATTGTCATCTTGCTTCTTGGTTGAT 629831 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 ||||||| ||| || ||||| ||||| || || |||||| || || | |||||| Sbjct 629832 ATGAAGGACGACAGTATTGAGGGAATCTACGATACTCTCAAGACCTGTGCCATGATCTCC 629891 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104 ||| ||| || || || ||| | || ||| | || || | ||| ||||| | Sbjct 629892 AAGATGGCTGGTGGTATTGGTCTGAACGTGCACCGTATCCGTGCTACTGGCTCCTACATC 629951 Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164 || || |||||||| || ||||| |||| || |||||||| || || ||| |||| Sbjct 629952 GCCGGTACCAACGGTACATCGAACGGTGTTGTTCCTATGCTTCGTGTCTTCAACAACACT 630011 Query 260165 GCGCGCTACGTCGACCAG 260182 || ||||| ||||||||| Sbjct 630012 GCTCGCTATGTCGACCAG 630029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177507762517652